Gene detail

Detailed information of PE_Scaf12102_1.8 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf12102_1.8	BETA-1,4-GALACTOSYLTRANSFERASE	Superscaffold14	1714372	1719108	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf12102_1.8

ATGTGCTGCAATCGTTGCCCTGGTGTCAACCGTCGCGTTACTGTTGACGTGGACGAGAATGCCGACTTATGTTCCAGTTGGGGTTTGTGTCACGTGTGTTCAGAGTGGTCTATCAGTGGCGTGTCTGGGATCTCGCGGGAGGGGAATTGTCTTGCATGGGCATCCATTAGATGTTCCTGCTATGACGTAGAGGTACCATAGGTTATGTATACAGGGTAGATGGGGGCAATAACAGAAATCAAGTGTAAGAGAGTTCAACACACACGCCACTGTAGACTGATATTTTGTCGTCCTTACGGCGCGTGTTATATGCACAAATTCTGGTTGTGTTCTCGTTGATTAACATGCAAATGTGTCATGTGAGCGATGCGATATTAGTACAAAATACGTGGAATGCATGGCAAAGTAAAATGTACGAGCGTGCACGTACCACCTACTTTTATTGTAATCCTATGACTGACGGCGCCGTAATAATTACATGTTAATGGAGGTGTCACCGTTAGATTAAGGTGACGTATAGTCTGTTCGCCTACCCGAGGTTGGGATGTTTTGTTTGTTATTTGAACACGCGACTGCTTACTAAACACAAACGGGGCAGTGTACCTTCAACATAGTTAGTATAGACTTAAGAAGGTCAAAGTAATCTATACATGAAACACAATGTCCTTTTAATAACAAAAAACATTCGAAACAAACCAACAAACACACTTAGCCCAGCAATAGTTTATCAACAATGATTACTATTCAATGTCATTGATCTCTGTAGACGGCTCTACGGTTTGCCTCCAAGAACAACACGTCGCTGGTAGAACACGACCACACTGGAGTGACGAGGGCGATGTACACCGCCACATTCCCGCTAGACAAGGACGACTCGGACAGAAAGGCGGCAACCTTTCTCCGCACCTATGACGTTGAATGCCAACAAAAGACTGTTCCGGCCATAAGCGCGCCGTGCCCGTGTGTATCCACGCAACTCAGTGAGTTAATGTACTCAGACAAACTATCTAGACCTTTAGCGCCACGTTTAGAACCGCACACACTGCACCGATTCAGTGAATAGCAATGTTAGTGTGTACTAGATTACTCCATCCTCGCTCGCCTAGACAGGTAGAGATGGTACACGATTGAACAGGTCTGTCAAGGAGCAAAACGTTTTCAGGGCCGGATACCGTGCTATATACGAACTTACCTTTTTTATTTCTTCCTTAGTGAACTGCATGACTCAAGAGATGGATATGACACGCGTATATTCGTGATTGTTTCGGCGCGTGCGTACCTATGTTCGTAGGCATGCATTTGGTACTGTGAATATATACAGTATATGTTTAGCAACAGTAGATGCACTGGTATTATTCATATCTAGATGCAGCGAAATATGCACACTGGTATGTGTAATTAAAATTAGGCTACGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGTGTGTTACCTCTGTGTAACAACAAGTGTGTTACCTCTGTGTAACAACAAGGGAGTTACCTCTGTTAACAACAAGGGAGTTACCTCTGGGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGGGTAACAACAAGGGAGTTACCTCTGTTAACAACAAGGGAGTTACCTCTGGGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGTGTGTTACCTCTGTGTAACAACAAGTGTGTTACCTATGTGTAACAACAAGGGAGTTACCTCTGTTAACAACAAGGGAGTTACCTCTGGGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGGGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGTGTGTTACCTCTGTGTAACAACAAGTGTGTTACCTCTGTGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGAGTTACCTCTGGGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGTGATACCTCTGTGTAACAACAAGTGTGTTACCTCTGTGTAACAACAAGTGTGTTACCTCTGTGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGAGTTACCTCTGGGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGGGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGAGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGAATTATCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAAGAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGTGTGTTACCTCTGTGTAACAACAAGTGTGTTACCTCTGTGTAACAACAAGTGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAAAAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTGTAACAACAAGGGTGTTACCTCTGTTAACAACAAGGGTGTTACCTCTATACAGTTAATTGGAAAACAACCACGATTTGTTCTGGCCAGACACATAAAGTCTATGACTGCTTGGGCTACATTTGCATAAAGACACACGTTCTAATTTAAATATATACGGCACTGACACGTGTGTCATCACGCTAGGCACTAATTCAAAGACGTATTTTCTTTCAGGCGGATCTTTCGTTCCCGACACGACGTTGTCGCCGTGGCCCTCGTTGACGGCCAGACACCCGGAGCTGCTGGCGGGCGGGCGGTGGAGACCAGAGGGCTGTACGGGGAGACAGCGGGTCGCCGTCGTCATCCCGTACCGCGACCGGGACGAACACCTGCGGATACTGCTGCAGAACCTGCATCCCGTGCTTCAGCGGCAGCAACTCGAGTACCAGATATTCGTTGTCGAACAGGTACGAAACCATTCTAGTTAAAAGTTTTGTTTGCAATTAGAAAGTTTCAACCCCGCAGCATGCTGAAATGGTAAACAAAACATCCAGTTTAAAATAAACTTTATTGGCAATACGCACGTGAACTGTTCGTTATCTCAAGCGATATTAACAGTCGCACGCAGTCATGCCCCCCACGCGTGCCTAGGGGTTCAATATTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13733	Glyco_transf_7N	N-terminal region of glycosyl transferase group 7	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003859	Family	Beta-1,4-galactosyltransferase	Interproscan
IPR027995	Domain	Galactosyltransferase, N-terminal	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19300	BETA-1,4-GALACTOSYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006688	Biological Process	glycosphingolipid biosynthetic process	Interproscan
GO:0008378	Molecular Function	galactosyltransferase activity	Interproscan
GO:0016757	Molecular Function	glycosyltransferase activity	Interproscan
GO:0033207	Molecular Function	beta-1,4-N-acetylgalactosaminyltransferase activity	Interproscan
GO:0033842	Molecular Function	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity	Interproscan
GO:0070085	Biological Process	glycosylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf12102_1.8 global RNA-seq network