Gene detail

Detailed information of PE_Scaf12080_2.4 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf12080_2.4	PEPTIDE CHAIN RELEASE FACTOR	Superscaffold5	70603110	70610444	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf12080_2.4

CAGAAATCCGCTAAACTGACAACTGTTTATTTTTCAGAAACATTAACCATAAACTACTCAAGAGGAAGTGGACCAGGCGGACAACATGTAAATAAGGGTGAGTTGTAAACATTAATGTTCCCAGTAGTAACTGATTGCCTTTCACCTATGACGAAACGATCCACGTTTGACGAAAATAAAAATAAACTGCTTTGCCGATTTGGCTAAGTCAAACTGACGAATTAATAAGTGCTGTGTTCACTGTGCACACAGTATTTGTTTTATATTTGAGGACATTCAAATCCAGACAAAGCAATTGCCATAAAATATAAAAAATGTCAAAGTATAAGGCTGAATTTTTTTGATAGCATAACTTGTAGGTACCTACAAAACAACACAATTATTACCACAATAGAAAATGGCAATTTGTAACACAAAAAACAAGAGGATGCTGAAAAATCTGAAATAACAAAATCTGTTTTTTCTCATATTTTGCCCTTCTCCCTGTCTGCCTATCATACTCGAATGTTGTACAGTTTACAGGTAATCTGTATCAATGTCTATACATGGGTGTGATTGTGCACAGTTACCCCCATTCACATGATAGACACAATTTACCCAAATGTAACATAAGTTTAATGACCATTAATGGTGTCTTGCCTGTACATTATACAAAATTGCAAGGAAAATAATAGTCTTGTTTCCATCGTTGTAATATTTTCAACAACCGTTTTTAGTATTAGTTCAGTAAAGATATACAAAATAAAACTTAATCTGTTTTTGAAATGGAACCATCAACTGATTGTACAGTGTTGTTGTTGTTGTTGTCAAATACTCTAGTAGTTGTTAACATATTTGGTGCATTTTCAGTGAACACCAAGGTTGAAGTGCGTTTCCATGTCGACTCAGCGTCTTGGATACCAGAGTTTGTGAGGCCCAAGCTACATGAACTGGTGTGTACTTGTGATTAATACATATAATTTTATTATAATAAATATATATATATATACATATAAGTTGCATTCCGAGATTGTCCAAACTTTTAAATATATATTTCCGATGAATCAACATGCTCCATACGTTATTTCACTTTCCTCAAAACCATACAAACCTTGTCCACATAATGTGCAATTTTAAGATAAAACGGTACTAAATACAAAATATTATATCTGTATGTCTTACATTTATTCATCTGACCAGACATGGCGAGCGGTAATTTTGCAAAAACAAATATTACATAATTCATCGAATAACATCAAATTCCAAAGTGACATATGGTAGTAGGTAAGATCAAATAAGTAAATATTGTTCATGTTGTATACTTTCTTAAAAACACTTACAATTGGTAGTAACTTAAAATGTAACTTTAATAGACTAACTTTGGAGCATTGTAAGTTCATCTCCTCCCAGGCGCTCAAGTCCACACCTCTATTCTTCTAAGCATTCGCTTTCTTCATCCACTGACCTCTGATCTATCAATTGGCAATGTATTTGAGAAGACACTAAGGTTGTTATTTTGAGTTATTTACATTTATTATTGAACAAATTGAGTTGCCAGTCATTCCCCTGGTGACGCTACTTTGTTTGTGGTAAAATTATTATCTGCTGCATGCAATGCTATAACTGATGATAGCAGAAATTGAACGGTCATTGGAATGAGTTCCAAGTACTATAATGGTGACAGTTGCTGCCCATTGTTTGTTGCCCCATGGCTGCACCTGTGTAAAAGTATTACCCACTGCATGCAGTTGGTCATTGTACAAGTTTAAGTTCAAAATACAGCACTGGTGAGCTAGTGATGAATTAAACCAGTTATTACATGGTACATTACAGGAGGCAGGACGCATCACGAAAGATGGCTGGCTGGTGGTGACATCGGACAAAACGCGCAAGCAGATGTTGAACCAGGCCGACTGTCTAGATAAGATACGCGTGCTGGTGAGAAAAGCCAGCAAGAAACCTTATGAGCCAACAGAGGAAGATATGAAGGTGCTGCACGCTAGGTATGCTCGTCTTCATGCTGTGACTGGATGTTTGTTTACGACAACAAAACAATCAAACAAAATTCATGCAGTGATGACATTCACATTACCACATTTCCTTCCTCCATCCATATCTCCCTCTTTCTCCCTCTCCCTCCATATTTCCCCTCTCTCCCTTTAAACTATCTCCCACTGTCCCTCATTCACTCTCTCATAACTTTTCCTCTTTCCATGTATCCTTTGCACCCTCTCTCACTCCTCTCTCTCTGTCACTCTTCTCTCTCTCTCTCTCCTCTACATCTCTCCCTCCCTCCCTCCCTATCTCTCATCCATTCTCACTCTTTATGTATTCCTATTTCTCAATCTCCCTCCCTACCTATGTTTCTCTCCCTGCCTCTCCCTCTATCCACCTTTCCCCTCTCCCTCCCTCCCTCTCTCTCTCTCCCTCTCACTCTCTCTTCCCCTCTCACTCCTTACATTACAACATTATAAAATGTTGAAAAAAGAGCAAGAGTTTAATTATTGTAATTATTTGTGATATTACAAATTAATACTAAAAATAATTATTTGTTTTTCATGTTAGTTATATAAACAAGTTTTTTCCATGATTATAAAAAAAAAAAGGGATATTTTATTTTAATTCAATATATTAATGTAATTATATTCAAAATTCAGGAGACTCCTGTCAAATCGGGAAGCTTTGAACCCTGATGGTGTCTGTGTCACTTCAATTCCAGACGAGAAAAGGCTCGGAAAGCAATGCTACGGGAAAAGAGGGAGCACTCATTGAAGAAATTCTCCCGAAGCAAACCAACGATGCATGATGTATGAACCAGGATGCCAGCTCCTTACAAGAATAGTCAATAGACAATGTATTCATGCACCTTCTGTACTACAACATAGTACGATAGTGCAACAGAATGAATACAAATGGAGTGTGAACAAACGTTTCGAGCCCATTAGCTCACTCGGTTGTGAAAAGAGAGCAGGACATTTGTACATTAGCCGTAATTCTTCTTTGTGTAAATTTGCTATTATGACATGTCTGTGAAGGAAATAAATATGAAGTAAGGAATATTGAGGTTTATTTGATTATTATTTGGCACATTTACAACATAACATTCCACTAATGTACAGTCGAACCCCGCTATACAGTCACATTGGTAATACAGTCACCTTGCAATTAAGGTCATACTGGGACAGTCCAAAATTATGTTTCTAACGGTAAAGTACAGGGAATAAGGTCACCTCGTTGTTGAGGTCATTTTAAGCCAGTCGCAAGGGTGATCGTAACACTGAGGTTCTACTGTACTTAGGTAGATATAATATGGTAGATAGATATTGACATAATGTATCAATTGTAGACTAGGCTGTCCTCTTGCTTGGGCATTTTCTAAGTGATGTTATGTTTCTCTCCCTGGATCCTAATAAACCAGACAAACATGACGTTTTCAAAAATATTAAAACACGCAATCAACCATGATCTGTCTGTTACGTGATAAGTGACGCTAAAGCCTTTCAATAAATATTATATTTTGTCATACAAGACTCGACGTAAGATTAATAAAACTAATGTCGACTGCAGGTTGCACAAATTTTGTGTAAATGTAAAAGTGTACCATGCTCGATACTGTTGTGATTTCCTTTATTGTCTTCTCTTCAACCATAGTAGACTCTTGCAGCAAAAAACCCTGATATAAGTAATTAATAAGGAACATTAGCTTAAGTAGAACTTTGAAAACATAACAGACCACTGTGATACAATGCTAGCATCTATAATGCACATAACTATAAGTACACAAAAGTGTACTTGGATCAAGGTTTGATTATGAACATATTTACAAATATTAATACGCTATATATCACAACCATACCATACGATTTATTTTTCATAAATAGCAATTTCAGTGACAGGAACCGACTGAAATCGGTATAATAGGATAGCCAATTGATTCTTCAGTGACAGGAACCGACTAAAATCGGTATAATAGGATAGCCAATTGATTCTTCAGTGACAGGAACCGACTGAAATCAGTATAATAGGATAGCCAATTGATTATTCAGTGACAGGAACCGACTGAAATCGGTATAATAGGATAGCCAATTGATTCTTCAGTGACAGGATCCGACTGAAATCAGTATAATAGGATAGCCAATTGATTCTTCAGTGACAGGAACCGACTGAAATCTATATAATAGGATAACCAATTGATTCTTCAGTGACAGGAACCGACTGAAATCGGTATAATAGGATAGGCAATTGATTCTTCAGTGACAGGAACCGACTGAAATCTGTATAATAGGATAGCCAATTGATTCTTCAGTGACAAGAACCGACTGAAATCTGTATAATAGGATAGCCAATTGATTCTTCAGTGACAGGAACCGAATGAAATCTGTATAATAGGATTACCAATTGATTCTTCAGTGAACAGCTGTTCTAACAGTAAAGTAAAATGAAAGCTGTTACAAGAACGTAACAAATACAACGAATAGAGGAATTCTACACCGAGCTATATGACAGTGAACTGAGTACCATAATTCACACCGACCTGAAAGAGGTACCAGAGATAACACCATGGGAGGTGGAAGCTGGGCTAAGAGATATGAAGAATGGGAAGACATCAGGCAATGACCATGTAAACATTGAAACATTAAAAGCAGGAGAAGATACCACCTCGAAAACACTGGCTAAGCTGTATACTAAATGCTTATCAGAAAGACGAATACCCACCGCCCGCATGGAAGAATGCAAAAATGGTGATAATCTTGAAGAAGGGAAATAAGAAAGACTTAAAGAACTACAGACCGATATGTCTGTTATCAGACATCTACAAATTACTCATAAAGATACTAATGAATAGGCTAGAGAAGACACTCGACAAAAACCAACCACGAGAGCAAGCAGGATTCAGAAGCAGGTACTCAATGACAGACCACATATTGTCGTAAACCAACTGAAAGAGAAGTGCCGAGAATATAATATTCCGCTCTGCATCGCTTTCGTCGACTACGAGAAGGCTTTCGACTTGGTGCAAATTCAAACAAAACTGACCTCCCTTCAAGAATAGGGGATAGAAGACGTATACATTGAACTCGTGAAAGACATCTACACCAACAGCTCGGTGGCAGTCCACCTACACAAAAAGAGCAACAAGATCAACATCAAGAGAGGAGTACGACAGGGTGACACCATATCGCCCAAGCTGTTTGCAGTAACACTCGAAAGCATATTACGAAGACTAACCTGGGAAACCAGATGCTTGAGGATAGATGGAGAATATCTCAGCCATCTTCGCTTCGCCGACGACATACTCTAATGCGCTACTACACCGCAAGAACTACAAAAAATGCTGCAGGAGCTAACTGATGAAAGTGAAAAACAAGGTCTGAAGATGAACATCTCAAAGACAAAAGTGGTGATAGAAAATGACACACCAATATATCAACACAACTCAGATAGAGAATGTTGAAAGATACGTCTATCTGGGACAGCGATACAATATCAGAAACAAAAACCAAGACAAGGAGATTCAAAGAAGAATCACCTCCGGCTGGACAGCATTCGCCAAATACCGCGATATCTTCAAGGGTAACTTTGGAACTTGCTTGAAGAGACAAGTCTATAACTCATGCATACTTCCAGCGATGACATAAGGTGCAGAAACATGGTCACTCACCATCCAGGCAAAGAACAAGCTAGCAGCCACACAAACAAAGATGGAAAGAAGTATGTTAAACATCACACATCGGGAGAGAAAAACAAACATCTGGGTAAGAGAGAAGACAAAGGTCATAGACATGATAGAACAAATCAGAAGACAGAAGTGGACCTGGGCAGGGCACATCAGCAGACTATGAGATAACCGATGGACATCGCGTATCACAACCTGGAGACCTTACAAAGGGAAACAATCTAGAGGAAGACCAGCGAGACGGTGGAGAGACGAACTAGATGAGAACTGGAAGGGCACCATCTGGCAGAGGATAGCGCAAGATAGGCCCAACCATGGGACACTACGGCTACACAATGATGAATGATGATGATGAATTACAAATGTCAAGTTGGTGTTGGAATGAATAGGTGAGGTGAAGTGCAAAGTACTTTGTATAACACTAGGGACTGGATACCACTCTGTAACAGAACTTACTTTTCTTTACATCAACATAATTCTGATGTTGGAAGGAGTCGGGTAACTAGAAGTTCACATTCAGTTCTCAGCTCACTGTTCAGTATAATTAAAATAAATATACAAACGAATAACACCCTGCGTGATGGCATCAAGCCTTCAACTTTGCCGTGTCTGTAAACTTCTGACCGTAGAGAATCTCTTCAAAGTGTGAAAGTTGGGTGAGGAAGCCGTGATTGGGATGGATGATGGGGCGATGTTCCTTCATGTAATTATACGCATCCCGCAGGACCCAATGCTGCGTACACATTAGGTACGCAATCGCCACCGAGGCACTACGACTGACACCGAGATTACAATGCACAAGCACTCGCCCTCCGCTGTCAATCGCGTCCTTGATAAACTTAGACGTTGCGAGAAACTCGCTCAGTAGATCGGACGTGCTATCATCCTCAAGGTTTACGGTGTGATAGTGAATGCGCCCGGAAAACGGAGATAACTGCTCCAGCGTGATACTAACGATGTGCGTGACTGCGAGATCTGTCACAATCTTTTCATTTGTTGCCTGGTCGATGCGTCCAAGGTACAGTTGATCCTCGAGTACGACTGATGGATACTGCAGGAGCAGTTCGCTTCGCTGGCGTCCAGTTTTCGGTATCTTCTCTGTGCAGAGATATGGGTGTTTCTTATGGAAGCTGTCAAACCCTCCCTGTACGATGAACGCGTGGGTTCCTTGCGCCAACATGTCCTTAACGGTTTTACTCAGCATGCTCTCTTTGAGCGAAAGCGACAACCCTTTGTGGTCATAAACAATCACCATCGTGTAGGTATGCAGTGGCTCCACCTTGTGTGCGTTTGTGAGGTTCGACACGTGTACAGCGGTCACAATGTGCTGTTTGAAGTAATCCTCGGCGATGCGAGTGTCGACGATCAACATATAGGTCGGGTCATACATGTATGAACTCAACTGGCCATCATTGAGACTATTATAAAGTTGAGTCACCGATATATACCCATCTTCTACATCATCCACATTAGGCATCACCACCGGCAACTGGACGTTTGTGAAGAGCAGATGCTGCATACGGTTGCTAGGCAACGAGGCGGAAGAACAAACCTCCGATGACGATGACCCCAATTGATCCCTCGTAGAGTCCGACTGGAAGTCGGGGCAAACTTTGACCGAGGCTTTCCGCTGGAACAGACGAGACATCTTGTTGCTCCCAGAGACAGCAACATCTCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00472	RF-1	RF-1 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000352	Domain	Peptide chain release factor class I	Interproscan
IPR052104	Family	Mitochondrial Release Factor mL62	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11075	PEPTIDE CHAIN RELEASE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003747	Molecular Function	translation release factor activity	Interproscan
GO:0004045	Molecular Function	aminoacyl-tRNA hydrolase activity	Interproscan
GO:0005762	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0006415	Biological Process	translational termination	Interproscan
GO:0016150	Molecular Function	translation release factor activity, codon nonspecific	Interproscan
GO:0070126	Biological Process	mitochondrial translational termination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf12080_2.4 global RNA-seq network