Detailed information of PE_Scaf12040_0.11 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf12040_0.11BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1Superscaffold14718830247203078+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF14835zf-RING_6zf-RING of BARD1-type proteinDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001357DomainBRCT domainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR031099FamilyBRCA1-associatedInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR039503DomainBARD1, Zinc finger, RING-typeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR13763BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006974Biological ProcessDNA damage responseInterproscan
GO:0031436Cellular ComponentBRCA1-BARD1 complexInterproscan
GO:0035066Biological Processobsolete positive regulation of histone acetylationInterproscan
GO:0035067Biological Processobsolete negative regulation of histone acetylationInterproscan
GO:0045717Biological Processnegative regulation of fatty acid biosynthetic processInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0070531Cellular ComponentBRCA1-A complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf12040_0.11 global RNA-seq network
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