Detailed information of PE_Scaf12039_19.7 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf12039_19.7SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATEDSuperscaffold32221120122232848-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01805SurpSurp moduleFamilyInterproscan
PF12230PRP21_like_PPre-mRNA splicing factor PRP21 like proteinFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000061DomainSWAP/SurpInterproscan
IPR000626DomainUbiquitin-like domainInterproscan
IPR022030DomainSplicing factor 3A subunit 1, conserved domainInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR035563DomainSplicing factor 3A subunit 1, ubiquitin domainInterproscan
IPR035967Homologous_superfamilySWAP/Surp superfamilyInterproscan
IPR045146FamilySplicing factor 3A subunit 1Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR15316SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf12039_19.7 global RNA-seq network
TOP