Gene detail

Detailed information of PE_Scaf11952_14.12 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf11952_14.12	FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE	Superscaffold12	53920136	53925066	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf11952_14.12

ATGCATGCACGCGAGGGCGTCATGCACAGTCCCACCTATGGCGACGACCTCAAGAAGTTGTTCCCTATCGTTGAACCAAAACTCTCCGACTCTGGCATTGTGGACAATGTGCTCGAGTTCCTAACTTTCACTGGACAACGCACCCTGCCCGAGGTAAGCACTATATGCACACTGCACATATACGGTTGAAAAACAATTCTAGACCCGTTATAAGTTTCAATAAGATATTCTTTATAGTCTCAACTGAGAAATTTGTTTTGGTGTAGAACAGACATGACTGCATTATAGAAAAAACGTGTGATAAAGCAGCAGATAAATAAATAAATATGACACGTTTGTATGCACATCACATGCTTACAGGATTATGCTAAACATGGCAGAATACATTGCACTTTCAACACTAACAGTGACAGTGATACTACGGCAGCGGGCATCGTGATGAGTTAAGCTGTCTGATAGAAAAAATGGCACGAAGTGTTTATATCTGTTAAACCTGCACGGAGGAGTGCGATAATGTCTGCCAGATCGCAGCAGTTGGAATTGGTGTTATGAGGCCTTGATTTGTAAGTCGTTCGATATGAGTCTTAGATTAGAAATCTATTATATTTGTGCTCCAGAGCTAAGATTCGAATGTTGATTGTACGGTATATAAAAACTATGTGTACCAAAGTTCAACACGGAAGGTTTACCTGAAGACTTGATATTGCAAATCTGTTTGCCAACTTTAAAGTTAGAACCATTGGTTACGTTTATGCCATCACAATTAACTTTTTCTGATGTTAATAAAAAAAATTTCCATTGTTGTTGAATTGATTCTCATTATTCTCTCTTCACTCCATATCACATCATGTATTAGGTGGATATTATTGGGATGTCCTGATCGAAAAATAAAAATTTACTGTGGTTACCAATATGAAAACGATATCAAAGTTCTAATGTTGCCTTCATTTCACACAAATAAAATACGTAGAAATTTGGTAATGACCTATTTTGTATGGTTGCTGAGATTTTGCATACAGGTATTTTTGACCAGCCCTGTGACAGACACAGCACTTAGAAGAAGAGTCCGTTATTTGTTTAGATATTGTAGCATCATTGTCATGGTAGTCCTACTCAAGAGTTACTGACGTTGTCGTGTGACAGGCGATGATTACAATGGTGCCTGAGGCATGGCAGAATGATGTCACGATGACCAAGGACAAGAAGGCGTTCTACAAGTGGAGCTCCTTTGTCATGGAGCCTTGGGATGGCCCGGGTAAGATTTTATCTTCTTCACATTTTTTTCTCAAGTCACCTGTTTGTCTGACAGGGAATCATCTAATTGTTCTCACTTCATCACACCACAAATTCTCCTTGTGCTGAAGTCAAAGAAATGCAAAGTGTTCAGTTTGTAAAGTACTCATGAACATTTGTTGCTAAGAGCATGTTATATTTTGCCCCCCCCCCCAGCAGACCTATTCATCAAAAACAACATTTCAACTTCCATTGAAGCATTCAGCTACACTGCAATGACTGCATGAAAGCTGTATGTTCCTATGATTGGTCTATCCATCACGTAACCTGTTGCCTAATAATATGTCTGTCAAGCCATTTAAAAAATAGATGCCGAACGCTGGAGATTTTGGACATTCTATTGTATATTTTGTTGAAATTCTGGCCCCAAATGTTTTTCTTTTTGATATTTAACATGGTCAGGTAACTGGATGCACAAATATCATTTATCCATACTGATGTTGTTTCAGCACTGTTCACTTTCTCTGATGGTCGCTACGTGGGTGCTGTGCTGGACAGGAACGGTTTACGACCATCGCGATTCTACGTGACCAAGTCAAATGTTATGTACATGGCAAGTGAAGTGGGGGTTGTGGATGTGCCTCCAGAGGAAATCGTCCAGAAGGTGGGTCACTGGGTGCTTTCACTTTGTTTGGTTATTAGGTTGATAAATTTAAACTGTAATATTCAGTAATTCCTGTAATTCACAGTTGGAAGGGTTCTGCCTTTATCAGTCAACAACATGTGATTGGTTTGTTCCCAAAACTTATAGTTTCCATGATAAAAAAAGCACAGTAATAAACTTCTGCGGCACCCACAGCCTCAGAAATCATGAACAGGGACGCACAAGAGTCATCATTAGAGCAAAGGACTGCCGAAGGTATAAGGTTTCAAACAAATATGTCTCGACTCTTTATGAAAGGTGGCTAAAGTTTCAGCTGATTTTAAAGTCATTGGAGTTGATTCCAGATTTTAGGTGCAGCTACAGAGAAAGCTGGTTAGCCAATTTTTTTTTTTAATAACAAAAAGTTGTGAGACAGATGATCTATGGTTCCTGACTTATATAAACCCTGGTAGCATGGTTTGATGCACCGTAGAATTTGGTCACTGTTGTCCACCAGGGTCGCCTGAAGCCTGGCCGCATGCTGCTAGTGGATACGAAGGAGAAGGTCTTTAAGAGGGACGACATCCTCAAGACTGAGATCGCCAACCTACGCCCCATCCAAAAGTGGCTCGAGGAAGAGGTGAGGGGGTTGTCTAGGGTGAGGTGGAGGGGGGTGGGGGGATGGGGCTATCTTAACGGTGAAGATACACAATCTTGTATTCAGTTATTTAGTAAATTTGGGACGTAAAAGAACCACTGAGGACGACAAGCATCCTGCAGTGACCACCCTCAGTGCCAGCATAGAAAGGTCGGTTTACCGATAATGTTCTGAAAAACGCTGACTAGTTGAATGAGATCTCATTAACCTTAACATTCTAACTACAATATATGCAGAGTAGTCAGTTAATAGAACATTACCGAGCACTGGAAACAGCTAGGAACCTAGTTGGCTATGAGCTCCCTCATTTGCAGTAGCAATTTGTCAGTTAAAAAAATACCGGAATCCTAGTCTACCTACCAACTGCCACTTTGAAACTTTGCCAATCTCACTTTGCCTCTTTTGCACTAAGAACTGTTACTGTCTTCTACCAGTGTTTATGCCATATAAAAAACCCACAAAAGTGATGGAAAAAAACGTTGTGAGCTCACCGAGCCAATGCTTTTGAGCTACAAAAAATTAGGTCGCTGCATTAGCTGTTGCCAGAACACTTGCTTTGGTAATGGAGTAAATGTCAAGAGTACCTCGTCCAAGTGCATAGTGCACATTTCATTTAATGGAGATTGTTTGACATTAGTTCAACTCAGCAATCATTACACGTTTTTCATCAACCACTTTTTTAGAAACTTTTTTTAAGAATGCTTATTAATTTTCAAAGATGCCAAAATGTAATAATAAAATAATAATACTATTTATATAACGCCACATCCAATGCAGTTTATGGCATATTCAGATATATAGATAACATGATTAAAAAATCTTAAAAACAATTGCTGTATCGTAGATAAAATCATGTAATATTTTGCTATGAAATAATATAATAATTAATAAAATAAATAAATGTAAACATCGACCATAGTAAAACTAGTAGAAGCATGAACATTTTAGTAAATTATGTAAATCACGCTTAATATTTTGGTAGATTTTTGCAGTGGAAACTGCCACTATGACCCAAAATATATATAATATAAACTATGACCCAATATATATATATATAATATATATATATATATATGAGCACCTGTATTGCAGGTACTTACAATGGAATCATTGTATGAGAATCACAACCGCGGCCACAAGCTGGCAAGAGAGGACAGTAGTGCCCACTTGACGGACTACCGCGGCAGCGTAATGGAGGAAGACCGCAGGCTGGCTCTCTTTGGCTGGAACATAGAGGCCGTCACCCTGCTCATACTGCCCATGGTGCAGAACAAGTACGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAAGTACGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAAGTACGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAAGTACGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAAGTACATTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAGGTACGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACACGTACGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAAGTATGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAAGTATGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAAGTACATTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAGGTACGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACACGTACGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAGGTACGTTGTCACTTAGCTCATACTGCCCATGGTGCAGAACAAGCAAGAAAGTCAACCTTTCACCTAGGTCTTGTACATTATGTGATGTTGTTCTCCATTAGACGTTTCTTCTTTCTATTTAGAACTTGTCTTGTCCTAATGACTCCATTACTCATCGTTATGATTATATCATCTCGTTAGTCTACCACAGTCTTGTTCTTAGTTGGGTTGTCATTATTATTGTCTCACATTTTTGTTCTTTAATGATGGGTGGGATTGTAGCTTAATGCCATAAAATCGACCATACTTTATCAACACATGTAACAAATTATTGAACCTTCTGGCACAGCGGAGATTAACGTTTAACACAGCCATCAAAATGTTCTGTTATAAAAATCGAGGCGATTTTTGTAATGTTAAAATATTACAAGTGCGGTTACTAACGATTAGTTCTACATTGTGCAGGAAGGAGGCGCTGGGGTCGATGGGCAATGACACACCCCTGGCATGTCTGTCCCGTCACAACCCTCGTCTGTTTGAGTACTTCAAGCAGCTGTTTGCTCAGGTCACCAACCCCCCGATTGACCCGTTCCGAGAGAAGATTGTCATGTCTCTGGTTGGTGCAGCAAATCGGTGGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00310	GATase_2	Glutamine amidotransferases class-II	Domain	Interproscan
PF04898	Glu_syn_central	Glutamate synthase central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006982	Domain	Glutamate synthase, central-N	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR017932	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR029055	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR050711	Family	Electron transfer and nitrogen metabolism enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11938	FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006537	Biological Process	glutamate biosynthetic process	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0015930	Molecular Function	glutamate synthase activity	Interproscan
GO:0016040	Molecular Function	glutamate synthase (NADH) activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0019676	Biological Process	ammonia assimilation cycle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf11952_14.12 global RNA-seq network