Gene detail

Detailed information of PE_Scaf1183_9.13 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf1183_9.13	HEAT SHOCK TRANSCRIPTION FACTOR	Superscaffold2	11962905	11965527	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf1183_9.13

ATGACGTCACAATCGAGTATTCCGACGGCCGATCAACCGAACAATAGTCGTAAACACGCCACTGTGCTACGAGCACCTAGGTTACACAAAACGACAACGTCTGCGCGCAGATTGTGCGATATTGCCGCCAGAATGCCAACAGACGAGGATGATCTACACGACGTCGACACGACCTGCAAGGAATTGGAGCGCTACGCCGAACTCTCAATCGTATCGTTTCCCCACCGTCTCTGGGCTATCGTCAGCAAGTACAAGGACGGGCTGATCCGCTGGAGCGTCGATGGCACGAAGATCATCATTGACGAGAAGAGCTTTGAAGAGGAGATTCTCGATAAGTACACCGGCCTGCTAAGGTCGAACAAGCTGCGGAGCTTCAAGCGCCGTCTCAACGCGTACGGCTTCCGCACAGTTGTCTCACGTATAGGCGACGCGGGCGGCGCTGGCGGAGACAAGTCGCCGAAGGGCAAGATGAAGGTGCAGTGCGAGTTCAGCCACCCGAATTTCCAGAGAGGCAAGCCGCACCTTCTGAAGCACGTCATCTGCCAGGACCCGTCTTACAAGCGCAAGCTGGCGCTGCTGCGGCTCAAGAGGAAGAGTCGAGACGACGACTTAAGATGCCCGAAGTGCGCGTGTCGCTTGAACAGTGAATCGATCAACGACCTCTCGACAGAACCGCTGCCATCGGGCGTGCGGAAGGACCAAACGCCTACCCAGTCAACATCCAGCAAGAGCGACACGGCGTTGGATGCACCGACGAGCACTGCGGAAGTCAACAGCACAAAGCCGGGTGTGGCGACGCGTGACAAGGACAGAGACAAGGACAGGATAGTGATGCTGCCGTATGTGCTCAGCGGCCGTGGTTACGTGCCTCTGGTGCCGAGCAGGGGACGACTGGAGGCTCGAGTGTCAGCGACGACTCGGCACAGACAGCGACCGATCACCGCATACCACATAACAAAGAGATCACCGTGCATCTTCGGTCGAGTTTCAGCAGGTGAGTAACTCGATGTCCGACAGAGTCGACACGCTGTTTAAATACCGTGAGAATTAACAACAAAGCAACATATACTTTACCCTAGTGGATTGGGAGTTACACCACTGCTTGCTAGTATAGGATGGTTAAACTTTACATATGGCATATATTAAATCAGCATATTAAAAGATACTGTTCGTGTAGATCAGTACTAGTGTAGATTATATAGCACGCTATCAGTAAAGAAGTTTGGACGATGCGGATAGCGCAAATAGCTCAGACATCATACAGCAACAACAATCCAAGCTGACATCTTTGGTACTGGTGGAACGCTGACCACGACAGCACGAAGTTCTACATAGTGCATACAGCGCTTAGACTGCGGCAAACAGGGCTGGCTAAAAACTTCAACTGCATCGAATGTTTCTTCTATTAACACCGCGTGCATATCACGCCACCACTGCTTCGCCGGAAGTTGCACCAAACCAATTTCGTACAAACCCCGCATTCAGCGCATCACGCTTATTCGCCATATTTGATGCGTCATCCGTAAGACCACGCTGTGACGTCACGGATACAAGTGCTCTGTCGTAAATACTATTCGCGATGAGAGTCTTTTTCGGTGCTTGGCGCCATTTAGTCTTTTGGGTGGTGGCAGGTTATGCAATATACGATAGCAACCGGTTAATTTCACGACAGAACAAAACAGGTGTGTTTCATTAATGTTGGAATTTTGTTAACTTATTTCTACATAGAGAGGATATATTTAGGTACATATATGCTACATGACATATAAACGTGAATTTTATATGCCCTACAGTTTAAAATTGTTTAAGCCCGATTCTCGAGCTATAATCGTATCATGGGTGGTTTCTGTTTACCGTTATATCCGAATGATACGCAACATTATTTAGGTTTTTTGGAATATATATGTTCTGTTCTTGTATTTTAAAATGAAACTATTTGAAACAGTCTTAGAGCTGAGCAGGGCCGCGTTCAGTGTTCGCGCCGCGCGGCGCCACGACGTTGCAATCCGTCGCCAGAGGTGGAACGGTTAATTTTATGTACCGCGGCGTTCGCCGCATTCAAAATGGCGCTTAGTAGTAGGCGTTGTGCATTTGATGAAAATGCCGCTATCCCTGCCATTAGAAACACTTTGGCTTTATTAAAGGCTCAACTTGTCATGGTTGATTTGAAATGAAGCGCTCAAACCCTCCAACCATACCGTTAAAAAGAAACATCATCGAATGCAAAAGTTACAATGAAGACTATCTTTGGAGACGCACTAGCGTGGCATGCGTCGTGACGTCAACACGACCGCGACCTTACATTGAACTGCAAAATCGACTTCAAGGGCAAAAAGCGACATCGCGGTACAGCGCGGCGAGAACTTTAAACGCGGTCCAGATTGCTCGACTTTCCTTTCTCCATGCGCGCATTCGCCAGCGTATACTTACAGGTGGTCTGAGAAAGAACGACAGCCGGCGGCTCGGTCTGCCAAGTGGCAGCCACAACTGTCGTCCGTCGGACGGCCAGGCGCGGTCCATCAGTCACAGTCAGAGTCTCGCCGACCAGCGAGCCATGCTTGCCGTCGCCTCTTCCGTCACTAGACGACCGCCGGAACCACGTCACAGCAGCCCCGCGGAGTAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HSF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00447	HSF_DNA-bind	HSF-type DNA-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000232	Domain	Heat shock factor (HSF)-type, DNA-binding	Interproscan
IPR027725	Family	Heat shock transcription factor family	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10015	HEAT SHOCK TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf1183_9.13 global RNA-seq network