Detailed information of PE_Scaf1183_2.7 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf1183_2.7ATP-DEPENDENT RNA AND DNA HELICASESuperscaffold21230116712344414-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF08148DSHCTDSHCT (NUC185) domainDomainInterproscan
PF13234MTR4_beta-barrelMtr4-like, beta-barrel domainDomainInterproscan
PF21408MTR4-like_stalkExosome RNA helicase MTR4-like, stalkDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR012961DomainATP-dependent RNA helicase Ski2/MTR4, C-terminalInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR016438FamilyATP-dependent RNA helicase SKI2-likeInterproscan
IPR025696DomainExosome RNA helicase MTR4-like, beta-barrel domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR048392DomainExosome RNA helicase MTR4-like, stalkInterproscan
IPR050699FamilyRNA/DNA HelicaseInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12131ATP-DEPENDENT RNA AND DNA HELICASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000460Biological Processmaturation of 5.8S rRNAInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf1183_2.7 global RNA-seq network
TOP