Gene detail

Detailed information of PE_Scaf11769_3.7 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf11769_3.7	ATP-DEPENDENT RNA HELICASE	Superscaffold8	5987097	5993089	-

Gene Structure

More details in Jbrowse Sequence

CDS

PE_Scaf11769_3.7

ATGTCGGGAAAACGTCATCACCATGACAAGGAGAAACTTAAACACAGTCACAAGACTCAGAGAGAGGATCGCTATAAGTATAAAGAAAGAAGACACCACAGTCTCCGACACAGGCCCAGTAGGCACGAACAGGGATCCACACAACAACATAAAAGTCATAATCGCGACGACAAGCACATGCACAGTCAGCGTGAACTTGATCAAGGCTACAGACTTGGCCACAATCAACGGGAAGGTTACAGACACAACTGGCAAGAACGTGCTCACAGACAAAGTCACAAACTTGACACGAATCAGGCTGAATTGTTTTCGAACAGTAGTTCTGTAAAGTACAACATTGATGGAACAACAACTGAAATTAAAGATGACAGAGAAACTGTACTTGATAACTGGCCATCATTGACATCAAATCTGGAAAAGGAAGCCAACTTTCCAGACTATGATTTCCCATGGGATAACCATAAGCATATCCTGGATAAAATATTCTTTGGACCGGGTGCCCAGATTTGCAAAGGAAAGGAAGAGTACAATGATTTATGGGCTTTTCTAAACAAATATATCACGTATAAAAAACAAAAGGCAAACTCACAGAGAATGAAGACAACCACAGGAACATCTAAAGGAAACACAGGTACACATAATTTGCCTGAGGTGGATGACAGAAAACAAATCAACATGACACTTAATTTGACCAAAGATGGTGAAAATTCATTGAGGAAATACACAGAACGGCATGGCAATATGTCGAATGATCCTAACACCCTGAATGCACACAGACTGGCCCAGTTTCGACAGATCATCTTGTATTACCTTGACTTTGTGCAGAAACAGAAACTAGCAAAACTCGCCAAGGTACAGAATGACCAGCAACAGTTGCCGATCTACCAGTTCAAGGAACGCATCATTGACATGGTCAGACAGCATCAGGTGGTGGTCGTTGCTGGAGATACTGGCTGCGGAAAGTCGACACAAGTGCCACAGTACCTCCTGGAAGCAGGCTTCAAACAGATGGCCTGTACCCAGCCACGCAGAATCGCCTGCATCTCCTTGGCGAAGAGAGTGAGCTATGAAACGAACAACGAGTACGGTTCTGAGGTCGCCTTTCAGGTTCGATTCGAAAAGAGCAAGACGAGCGCAACACGGATACTGTTTCTGACTGAAGGGCTGCTGCTGAGACAGATCTCCGGGGATCAGATGTTGTCCATGTACGATGTTGTTGTCATGGATGAGGTCCATGAGCGACACATCCACACTGACTTCCTGCTCGGTATCATGAAGTGTCTGCTGCAGCAGCGAGATGCAGTTAAACTTGTTCTCATGTCAGCCACAATCAATGTGGAACTGTTCAGTGCCTACTTTGACAATGCTCCCGTAGTGAAAATACCAGGAAGGCAGTATCCAATCACACTCAACCACTGCCCACTGTCGATCGAGGAACAGGGCAGCAAGACAAGTAAAATCGATCCTGCACCGTATCTGCGTATATTGCAGGCGATTGACCACAAGTATCCAGCCAACGAGCGTGGTGATGTCCTTGTGTTTCTCAGTGGGATGACGGAAATCATGACGGTTGCTGAAGTGACAAAAGAGTATGCAGAGAAAACCAAACAGTGGATAATCCTCATGCTGCATAGCGCACTGCCATTAGCCGAGCAGGATAAGGTGTTTGACCTGCCACCTAGTGGTGTCCGCAAGTGCATCCTGTCGACAAACATTGCCGAGACATCAGTGACAGTGGATGGTGTACGATTTGTGGTCGACTCTGGGAAGGTGAAGGAAATGAGTTTCGATAGCAACTACAACATGCAGAGGCTGCAGGAGTTCTGGATCAGCCAGGCAAGTGCGGAGCAGCGCAAGGGACGGGCAGGCCGCACGGGTCCAGGTGTCTGCTACCGCATGTACTCTGAGTCCGACTACACTGCCCTGCAGGAGTACTCAACACCTGAGATCCACAGAGTCCCGCTTGACTCCCTCATCCTCCAGATGATATCCATGGGGCTCCCGGATGCTCGCAAGTTCCCCTACATCGAGCCACCAGCACAGTCGACAGTTGAGCACTCTATCGCTTTCTTGAAAGACCAGAAGGCAATAACACAAGATGAGAAGCTGACTGCAGTTGGGAAGATGCTGGCCCAGCTTCCTGTTGACATTGTCATTGGTCGCATGTTGATAATGGCCTCCATATTTGACATGTTGGATCCAGTACTGACAATCGCGTCATCACTGAGCATACGGACCCCATTCAACAGCCAAGCTCAGAGGAACTTTGACGTTGCAGACAGACGCAAAGAACTCGAGTCTGACCATGGTGACCTTATAACATTGTTGAACGCTTTCAACGAGTGGATTCGGATGAAAGCCGAGGGTCATCAAGGCCGCAGCCTCAAGTGGTGCAAGTGTCGTGGTCTGGAACAGCAGCGACTGTATGAGATGTCCAAGTTGAAGCAACAGTTCCAGGAACTACTGCAGGAGCATAGTCTGGTGGGTGAGTCGGGCAGCGGAGAGAGGCGGGAGTATACGCCCGTCGAGAGGAGGCAGAGGCTCATACAACGCAGAAAGCTAAAGGAGCTGCGCAAGCAACAGCAAGGCTTCACAAGACGTCGCAAGTATCTGAAGCTGGAAGATGAGAGCCAGGAGTTCCTCTCTGTGATGGACGACAACGATGATGATGACGATGACAGTGGCACAGACGACATCGACAGTAACATCAAGGACTTGGAGTTCCGCCTGACCCACGACCTGGAGAAGATCGAGAAGGGGTTCCAGAGTGGGGGCTTCACCCTCCGCGAGCTCAACCTGCTTAAGAGCATCCTGTGCAGCGGCCTCTTCCCACAGGTGGCAATCGCAGATGAACACAACTCTTACAAACCAGACTCAGAGGTGGCCTTCCACACGAGACGCAAGATGTTTGTCCTGCTTCATCCCAGCAGCATCTTTGCACAGAAGCCGAGCCTGCTGGAGCAGCCAGAGGACGAGAGTCTCTCAGAGGAGCTGTCAGCCAGACTCCGGTCACGCCATCACACGGTGCTCAGCAGCAAGCACCAGCTGCTGACCTATGTGTCATTGCTGGAGACGAACAAGCCGTACCTGGTGGGCCTGATGCGGGTGCCGGCACTGCAGACTCTCTTGCTCTTCTCCAGTTCCATCGACACCAATGCCGACTGCACGCTGATTGTGTGCGATGGTTGGTTGGAGTTGTACATACCGGAACCGGAGGTGGCCGAGTCGATCGTGAGCAGCGTGGTGCACCTGCGAGCCACCTGGCAGCAGCTCATCGAGATGAAGCTGGAGAATCTGGCTGCCCGGGGAAGTGACGACACCAAGCGAGGTGGACTGGTGACAAAGGCACGCAAGCTATCCCGGCAGCTGTCGGAGAAACTGGCCGAGTTTCTCGACTGCAAGATATTGTACTCTCTACGACGTATGATGGCAGTGGAGGCAGAGACTTTGTATGTGGGCCCGGTCCGTGTGGAAGGAGAAGACAGAGAGGGTGGAGAAGGGATGTTGTTCAAGCACTGCAGCTCAGCCCCAGAGCATCCGATCAAAGGTGGCAGTCAGGTGAATGAGTACCTGACGTACAACTGCCTGCGAGACAGCGACAATACCTGGGGGGACTACCAGCTGTGTATGCAGAAACACTGGACTTGTCCACGGTGTCACTGCAGTCTCGTTGTCACCATTGCCGAGAGACTGCAGCATGAAGGACAATGTCAAGTAATGGCGGCCGGGTCAGCATGTGACGATGGTGAGACGCTGGACCAGGAGGTGTCGGGTAAGAGGAAGCTGTTCTGTTGCGATGTCTGTGGGAAGGAGTTCCGCTTTACCACGAAGGAGATGCTGAAGCACAGGAAGACTTGCACCAAACTGTCCATTGTGATTCTACGAGTCGGTGCAAAAGTGATGAATTTCCGTCAGCGTGTCGCCTGGCTACTGCTGCTATGTTACCTAGCCTGCTCCTGTGCAGTTCTCTACTACCTCTTTGAGCTACAGAACTGGTACAGTTTCTACGCTGTTGAACGCATCGAAACTCGCCACAGTGACGCGTCACTGACGTGGCACTTTGCCAGCGTTCCCCCAAAGGTGTGGATTGGTGCTCTGGTGACAGCATACTTGCAGATCTTCTTTCTGTTGCTCGTGTGCACAAAGGCAACCCCAAAGTGTTCTCTTGCCCTGTTCTGGCCATTGTACCTGTACCTACAGTGTCGCTCGTGCTATGTGACACTGGCTGGACTGTCTCCACAGTCGCTTACCATTCCAGTGGGGCACGGACATACTGTCATCGACACATGA

Transcript

PE_Scaf11769_3.7

ATGTCGGGAAAACGTCATCACCATGACAAGGAGAAACTTAAACACAGTCACAAGACTCAGAGAGAGGATCGCTATAAGTATAAAGAAAGAAGACACCACAGTCTCCGACACAGGCCCAGTAGGCACGAACAGGGATCCACACAACAACATAAAAGTCATAATCGCGACGACAAGCACATGCACAGTCAGCGTGAACTTGATCAAGGCTACAGACTTGGCCACAATCAACGGGAAGGTTACAGACACAACTGGCAAGAACGTGCTCACAGACAAAGTCACAAACTTGACACGAATCAGGCTGAATTGTTTTCGAACAGTAGTTCTGTAAAGTACAACATTGATGGAACAACAACTGAAATTAAAGATGACAGAGAAACTGTACTTGATAACTGGCCATCATTGACATCAAATCTGGAAAAGGAAGCCAACTTTCCAGACTATGATTTCCCATGGGATAACCATAAGCATATCCTGGATAAAATATTCTTTGGACCGGGTGCCCAGATTTGCAAAGGAAAGGAAGAGTACAATGATTTATGGGCTTTTCTAAACAAATATATCACGTATAAAAAACAAAAGGCAAACTCACAGAGAATGAAGACAACCACAGGAACATCTAAAGGAAACACAGGTACACATAATTTGCCTGAGGTGGATGACAGAAAACAAATCAACATGACACTTAATTTGACCAAAGATGGTGAAAATTCATTGAGGAAATACACAGAACGGCATGGCAATATGTCGAATGATCCTAACACCCTGAATGCACACAGACTGGCCCAGTTTCGACAGATCATCTTGTATTACCTTGACTTTGTGCAGAAACAGAAACTAGCAAAACTCGCCAAGGTACAGAATGACCAGCAACAGTTGCCGATCTACCAGTTCAAGGAACGCATCATTGACATGGTCAGACAGCATCAGGTGGTGGTCGTTGCTGGAGATACTGGCTGCGGAAAGTCGACACAAGTGCCACAGTACCTCCTGGAAGCAGGCTTCAAACAGATGGCCTGTACCCAGCCACGCAGAATCGCCTGCATCTCCTTGGCGAAGAGAGTGAGCTATGAAACGAACAACGAGTACGGTTCTGAGGTCGCCTTTCAGGTTCGATTCGAAAAGAGCAAGACGAGCGCAACACGGATACTGTTTCTGACTGAAGGGCTGCTGCTGAGACAGATCTCCGGGGATCAGATGTTGTCCATGTACGATGTTGTTGTCATGGATGAGGTCCATGAGCGACACATCCACACTGACTTCCTGCTCGGTATCATGAAGTGTCTGCTGCAGCAGCGAGATGCAGTTAAACTTGTTCTCATGTCAGCCACAATCAATGTGGAACTGTTCAGTGCCTACTTTGACAATGCTCCCGTAGTGAAAATACCAGGAAGGCAGTATCCAATCACACTCAACCACTGCCCACTGTCGATCGAGGAACAGGGCAGCAAGACAAGTAAAATCGATCCTGCACCGTATCTGCGTATATTGCAGGCGATTGACCACAAGTATCCAGCCAACGAGCGTGGTGATGTCCTTGTGTTTCTCAGTGGGATGACGGAAATCATGACGGTTGCTGAAGTGACAAAAGAGTATGCAGAGAAAACCAAACAGTGGATAATCCTCATGCTGCATAGCGCACTGCCATTAGCCGAGCAGGATAAGGTGTTTGACCTGCCACCTAGTGGTGTCCGCAAGTGCATCCTGTCGACAAACATTGCCGAGACATCAGTGACAGTGGATGGTGTACGATTTGTGGTCGACTCTGGGAAGGTGAAGGAAATGAGTTTCGATAGCAACTACAACATGCAGAGGCTGCAGGAGTTCTGGATCAGCCAGGCAAGTGCGGAGCAGCGCAAGGGACGGGCAGGCCGCACGGGTCCAGGTGTCTGCTACCGCATGTACTCTGAGTCCGACTACACTGCCCTGCAGGAGTACTCAACACCTGAGATCCACAGAGTCCCGCTTGACTCCCTCATCCTCCAGATGATATCCATGGGGCTCCCGGATGCTCGCAAGTTCCCCTACATCGAGCCACCAGCACAGTCGACAGTTGAGCACTCTATCGCTTTCTTGAAAGACCAGAAGGCAATAACACAAGATGAGAAGCTGACTGCAGTTGGGAAGATGCTGGCCCAGCTTCCTGTTGACATTGTCATTGGTCGCATGTTGATAATGGCCTCCATATTTGACATGTTGGATCCAGTACTGACAATCGCGTCATCACTGAGCATACGGACCCCATTCAACAGCCAAGCTCAGAGGAACTTTGACGTTGCAGACAGACGCAAAGAACTCGAGTCTGACCATGGTGACCTTATAACATTGTTGAACGCTTTCAACGAGTGGATTCGGATGAAAGCCGAGGGTCATCAAGGCCGCAGCCTCAAGTGGTGCAAGTGTCGTGGTCTGGAACAGCAGCGACTGTATGAGATGTCCAAGTTGAAGCAACAGTTCCAGGAACTACTGCAGGAGCATAGTCTGGTGGGTGAGTCGGGCAGCGGAGAGAGGCGGGAGTATACGCCCGTCGAGAGGAGGCAGAGGCTCATACAACGCAGAAAGCTAAAGGAGCTGCGCAAGCAACAGCAAGGCTTCACAAGACGTCGCAAGTATCTGAAGCTGGAAGATGAGAGCCAGGAGTTCCTCTCTGTGATGGACGACAACGATGATGATGACGATGACAGTGGCACAGACGACATCGACAGTAACATCAAGGACTTGGAGTTCCGCCTGACCCACGACCTGGAGAAGATCGAGAAGGGGTTCCAGAGTGGGGGCTTCACCCTCCGCGAGCTCAACCTGCTTAAGAGCATCCTGTGCAGCGGCCTCTTCCCACAGGTGGCAATCGCAGATGAACACAACTCTTACAAACCAGACTCAGAGGTGGCCTTCCACACGAGACGCAAGATGTTTGTCCTGCTTCATCCCAGCAGCATCTTTGCACAGAAGCCGAGCCTGCTGGAGCAGCCAGAGGACGAGAGTCTCTCAGAGGAGCTGTCAGCCAGACTCCGGTCACGCCATCACACGGTGCTCAGCAGCAAGCACCAGCTGCTGACCTATGTGTCATTGCTGGAGACGAACAAGCCGTACCTGGTGGGCCTGATGCGGGTGCCGGCACTGCAGACTCTCTTGCTCTTCTCCAGTTCCATCGACACCAATGCCGACTGCACGCTGATTGTGTGCGATGGTTGGTTGGAGTTGTACATACCGGAACCGGAGGTGGCCGAGTCGATCGTGAGCAGCGTGGTGCACCTGCGAGCCACCTGGCAGCAGCTCATCGAGATGAAGCTGGAGAATCTGGCTGCCCGGGGAAGTGACGACACCAAGCGAGGTGGACTGGTGACAAAGGCACGCAAGCTATCCCGGCAGCTGTCGGAGAAACTGGCCGAGTTTCTCGACTGCAAGATATTGTACTCTCTACGACGTATGATGGCAGTGGAGGCAGAGACTTTGTATGTGGGCCCGGTCCGTGTGGAAGGAGAAGACAGAGAGGGTGGAGAAGGGATGTTGTTCAAGCACTGCAGCTCAGCCCCAGAGCATCCGATCAAAGGTGGCAGTCAGGTGAATGAGTACCTGACGTACAACTGCCTGCGAGACAGCGACAATACCTGGGGGGACTACCAGCTGTGTATGCAGAAACACTGGACTTGTCCACGGTGTCACTGCAGTCTCGTTGTCACCATTGCCGAGAGACTGCAGCATGAAGGACAATGTCAAGTAATGGCGGCCGGGTCAGCATGTGACGATGGTGAGACGCTGGACCAGGAGGTGTCGGGTAAGAGGAAGCTGTTCTGTTGCGATGTCTGTGGGAAGGAGTTCCGCTTTACCACGAAGGAGATGCTGAAGCACAGGAAGACTTGCACCAAGTCTGCCGACTGACAAGGATTTTCACTAATGCTGTGTAAGTCTCCACGTAAACAGAGTGAATGAGCAGAGCTGTTTGTTTTCTGGGTGTATTTGTTTCTGGTAGTGCTCTATTGTGGTTTTGCAATGCTGTGAGTGTTTTTGCTGGTGCACTGCCCAGGTGCAATGTAATTGACTCCAGGCCTGGCACCACTCTTGTGTACAAATCCGCTGTACCACCTCATGAGAATGGTGAATCGATTATATATCGTGATCATTATTTTAAATAAGTTGATTGGTTGAATAAACTTGAAGCAAATATAAATTTGTACATACATTAAAAGAATAGTACCTATGGTACTCATGCAAAATAACAATACTTATGTGTCCATGTAGCTGGTGTCTTGTAATAAATGTTATAAAATGTGGCATATGAGTGTAAGCAATGGGTGTAAGCATTACTTGGTTTCTGCGGGAGAGTTCCAACTTGCACCCAAACCTAAATCCAGTGCAACACTGCACTAGAAACAAATACACCAAATGTAATGAAATTGAGTGAAAATAAACAAGATTTGTATTTCTGTGTTTTGTAATGCCAGAATTATTTTCTTATACAATTATAATTTTTAAGTTGTTTAAGTCAGTCACCTGTTCAGACAAGTATGTAAATCATTATGCTTTGCAGTGTAATTATGTATCATACTATTCATCTATATTATAAAACAGTTCGTTCTCTGTTTGTACGCGCACCTATATCTCTGTCAGTTTTGCATGTAAAGAAATTTTGTATGTGATCTACCAGACCCATTGAGATGGTTCCTAGATTTAGACATTTTCGAAATTCATCCAAGTGGTGGAGAAATGGGGGCTCAATATTTCAAAACACGGCATGTAGAGTTCCAGCCGCAGAATTTAATATTTTTTTATATCATCATAAAGATAATTATGTCATCTACAAATTATAGTTTTTAAGTTATTGACATTTTCAAATTGTCAGCGCTTAAAATGCATCTGGTCTACCTGTTGCTGGTCACGTAAACATTTTGTCGTGTCAGCCCTGTGAATTCCAGCCACAGAATTTAATGTTTTTCTATATATTTGTACAGGTCGTTATTCCTTGTACAAATATATCACTGGGTGTATGCAGACAAATGCATTAGATTTTATGTTATCAACGTTACAAAATCCCAGATGCGTAACCCAGCTGCCTGTTGCTGGTTACGTAAGATACACGGTTGACGCGTGTGATTTTTGGCAAAAGGTTGTCCTAACAACTAGGCCAGTGACCAGTTACAATTTATTAATGTGTGTAGGCTGGAAACATTTGGGATGGGTTTGGGGTGTCTGGAACTGAAGTGTTGGGCATTTGAGGTTTGGTCTATTTTCGGTGTTCATAATTATGTCAACAATACTTTTTTATATTTCAGTGCAAATGATTTGAGGATGTATATGACTGCCTTTTTCCCCCTGGTAACGCTGGGTAACTCAGCCAGTAGCAAATAATTGAATCTATCGGTGGTTGTTAGCAGTAACTAATTGTGTTCAGTGGCTGTCATCATTCAAATGAACCTAGATAGAATCTGGTCAAAATGCACCAGTAATAATTTTTATAAATGTTATACTGTGATTGTGTTAAACGGAAACAAAGTTAACTATTTTGATCTCTTGTTTCAGCGATGCCATCTGCAGCTTGCATCACGGGTGAGATCCACACTGTGCTATGAAGACTGTCCATTGTGATTCTACGAGTCGGTGCAAAAGTGATGAATTTCCGTCAGCGTGTCGCCTGGCTACTGCTGCTATGTTACCTAGCCTGCTCCTGTGCAGTTCTCTACTACCTCTTTGAGCTACAGAACTGGTACAGTTTCTACGCTGTTGAACGCATCGAAACTCGCCACAGTGACGCGTCACTGACGTGGCACTTTGCCAGCGTTCCCCCAAAGGTGTGGATTGGTGCTCTGGTGACAGCATACTTGCAGATCTTCTTTCTGTTGCTCGTGTGCACAAAGGCAACCCCAAAGTGTTCTCTTGCCCTGTTCTGGCCATTGTACCTGTACCTACAGTGTCGCTCGTGCTATGTGACACTGGCTGGACTGTCTCCACAGTCGCTTACCATTCCAGTGGGGCACGGACATACTGTCATCGACACATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF15190	TMEM251	Transmembrane protein 251	Family	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR028024	Family	Lysosomal enzyme trafficking factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf11769_3.7 global RNA-seq network