Gene detail

Detailed information of PE_Scaf11765_2.7 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf11765_2.7	SUPEROXIDE DISMUTASE 2	Superscaffold6	58076850	58079416	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf11765_2.7

ATGCGATCAACCATAACTCTGCTCCATGTGTACAGGTGATCTGTTAAATGCAGTCAACCGTGACTTTGTTCTTGTGTATAGGTGATCTGTTGAATGCGATCAACCGTGACTTTGGGAGTGTAGCAGAGATGCAGAACAAGCTGAGCATGTCATCAGTGGGAGTGCAGGGTTCAGGCTGGGGCTGGCTGGGATACAACAAGGTCACCAGCAGACTGCAGGTGGTTGCTTGTCCCAACCAAGACCCTCTAGAAGCGACCACAGGTGACCGTCATCATAGGGATCATCTCAGAATATCAATGTCCGATATCAGACAAAATTACTTTAATTTGGGGAGGGGGTCAGAGGCAGTGTTCGTATGGCATCGGACATTGATAGTTTATGTTTTGGACCTATACTATTAATATATATATTGATAGATCATATCAATATTTACAAACTTTCGTCAGGGGGAGGAGTTGGGGAGCTGAGGCCAGATGAAAGTAATTTAATCTGATATTGGACGTCAGCGTTCTGAGATGATCCCTTGCTTTTAGTTATGTTACTACCGGTACCTACCTCTTTCATGTAAGCAACCAGCATATTTGCTTACTCCTGTATAACAAAACATACCCAGTGTCAATCAACTAGTTCTGATTTACTTTTTGTTGCTAGGGCTTTTTCTGTTGCTGCACCAACTCTTTAGAAAATGTTCCCTTTTAGTGTTAGATCATTTGAAATTCTGCCATCATTTAAAAACTTATCTTTATAACCTTACGTATCCACCTTTGCTTCCTGGAGTATCCATCCATCTGATGACAACTTATATACTGCTTATCGATTTTAAGGTTGAATAACCCTTTTGTCTTGATGTGACTCTGAACTTGGTAGCCAAGGATTTAGGCACAAAAGAAGTTACCTTATTATTATTAACAATGTACAAGTAGATAGGGCACTGGACTGATGATCGAGAGGATTAGAGTTTGAGTCCACCTGCTGCTGTTATGAAACTTGGCAGTTTTATTGACTTTATTCTGCCCCTGTCTTTTGGAAGAAGCCATTGGTCCCATCTACCTGGTGTCGATGTCAGGGGAAAAAATACATCCCATACAATGAGTAACCTGTCGCTGATTAAGCACCCTAGAAAAATGAAACTAAACCATGCTGTAGATGTGACAACAATAATTTAACAACAAATATGGTGGCAAACCAAAAAAGGGCTATTGATTCATTCCAGTCTCGTCATAATCGCACCCTCTTCCTTCTGTTTTTTATTTCGCTCTATAAGGAAGAGGATTTCAGGGTAAAACACGATAAACACCATTTTTAAAATTTTGACCAAACAAGGACGAAACGTTTATTGAAACGTGTTTAGCTAGGATACTAATTAATTTATACGGAAATGCGATAAATCACCATTAACCAAATCTGCAAAAAATATCTCGGACTTTGCTACCATTAATAGTTTTGGATTGTTACATACATCAACTTCATTTACAAGTTTTTATTTAAACTTTGAGGATGAAACACAAAAGTTACATTTTCTCAAAACCAAGAAAATGGATATATCACATTTTGCCCTGAACTCTTCATATTCGAAGTTCTAACCCGGTTGTTGCCTCTACTCATATCTCTGTCAAGGTAACGATTGTGTTTCTTTGTTCAGGTCTCGTGCCACTGTTTGGCATTGATGTCTGGGAGCATGCCTATTACCTGCAGTACAAGAACGTCCGGCCCGACTACGTGAAAGCCATCTGGAATGTGGCTAACTGGAAAGACATCGGCCAGAGATTTGAGAAAGCGAGGCAGTAAACACGTAGTTCTGAATGCTGCTCCAGGATGTAGACATTCAACGATTGCAAAGGCAGATAGCAACTATCTGGAGAAAGTCACTGATACTAATTACTAAGTGATAGTAACAGTAACTATTAGTTGCAGCTCTGCGTCAGAAAAGCCTGCTGTTTTGGTATCATGAAAATGCAGGCTTGATGATGTGCTCAAAGCAATGTGTGCTTTCCAAGACGTATTCTGAGTTTCATGCAGCATTTTGTTGAAGAAGTTTCGTTTGCAGGTTGATGTCACTTTCCATGTCACAGGAAACTTCTTTAGCTGATGGAATTGGCTGATGAACACTGGTTTTGTAAAAGTTCAGTGAATGATTTCATGTAATATAAATTTATTATGAACCGGTTCTTGTTCTCAACATATTTTGCTCAGTGCACATTTGATTTTAAGTAAATCTCTGAAGCACTATAATTGTCTTTATTATTTTGTATCTAAGCTAAAAGCTTTCATAATATGCACCGTGGGTCTTAAGACTTTGTGCATGCTGTCTGCCAAAAAATTATTCAGTATGGAAAACAGATTATAATACTGGTGTTGTTGTACTGGTCATGTGCAGATATTGTGATTGTCTCACGTATTACCTACTGGAGAAATGTAAAGTTAGTGGTATATATCCATCATTAGCTGTACGATGTTCTGCCATGTGACTTGCCATGATATAAAATCTAAAAATGTCATTGACTAACATCATGTGGTATTTGCAGAATCACTGGAAAATAAACTTGATTCTTGTTGTTGAAATGACT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02777	Sod_Fe_C	Iron/manganese superoxide dismutases, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019832	Domain	Manganese/iron superoxide dismutase, C-terminal	Interproscan
IPR036314	Homologous_superfamily	Manganese/iron superoxide dismutase, C-terminal domain superfamily	Interproscan
IPR050265	Family	Iron/Manganese Superoxide Dismutase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11404	SUPEROXIDE DISMUTASE 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004784	Molecular Function	superoxide dismutase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006801	Biological Process	superoxide metabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf11765_2.7 global RNA-seq network