Gene detail

Detailed information of PE_Scaf11524_7.6 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf11524_7.6	TRANSCRIPTION FACTOR COE FAMILY MEMBER	Superscaffold4	73111351	73114869	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf11524_7.6

CAGAACGTTATACAAACTAAATTGTTGATGTTTCTGTCAATAATAATAATAATAAACATAGCAATCCCAACAACATAATAACAACAGCAGTAATAATTATAATTGTTATTATAATAATAATTATTATTATGAAAGCATCATAAACACCACCACGAGTATGACCTGTGCACCGACTGTCCCTACACTGCCGCTCCCCGCCTTTGCAGGTCTGCTGAGCGCGGCGACGCCGTGCATCAAGGCGATCTGCCCGAGCGAAGGCTGGACGACCGGCGGCACGACAGTCATCATCATCGGCGACAACTTCTTTGACGGTCTCCAAGTCGTCTTTGGCACGATGCTCGTATGGAGTGAGGTTAGTGTGTCATTCTACGCTACACAGGCAGCCCGTTGTTTTAACTCAACGTCGTGACGTAGTCGCGTAATCGAGGCTTTGCTTTGCATGATGGGAACGTACACATGTTTTCGTTGCGTACTCAGTACGGAGCTAGTTGGAGTAAAAGTAAAACGGTCTCTGTAAAAATGCCAATATCCAGCACATTTTACTTCATCGTGAAATCGTGTGTTTTCGATATTACTGTTGCTATTATTATTATTCGTAACCGAACGATCATGATAAAAGCATGTTTTGTGTGGGTGATATACTTTCAATTGTTATAAATAGTACAGTTTTGCAAAGTCTACATTCACTATACATACTTTTCACTATACCCGCCTTACCCTGGGGACGTGGTGTTCACTCTACCCACTGTGGTTGCAGCTGTTGACCCCGCACGCGATCCGCGTGCAGACTCCGCCGAGACACATTCCCGGCGTCGTTGAGGTGACTCTCTCGTATAAGTCGAAACAGTTCTGCAAGGGCGCCCCCGGACGGTTCGTCTACACGGGTAGGTGCAGCACTGCGGGATACAGCCGGGTTAACCTCACCCCGGCCTCTCTCGTCACCCGCGGTCCGTAACACGCTCCGTTGCGTCTTCTGAACGATACTTCTCCACCTATCCTGCAATGTCCCACCGCTGTTCATTCATACCATGACGAGATGTCTTTTGACACTGTTTCTATATCTCAATTTCGTTCGTCCTCATTCTTGTTAAGTTTCAGCCATCTTCGTAACAAACGTTACCAGTTTGGAAATTTTTGTGTCTTATTATACTATAGGCTTTTATCTCTATATTCGTAACACATTTTACTGGACATATGTTGTAAGCAGACTATCCAAAATGATGGGCATATGAACCTTGTAGATAACACAATATTACAAACAATTTAATGATTTCCGATGTTCTTGCAGCGCTAACGGAACCAACAATAGACTATGGATTCCAAAGACTTACGAAACTTGTGCCAAGACACCCCGGCGACCCGGACCGGTTACCCAAGGTGAGTGTAGCACTCACACACGCACACACGCACACACGCACACACGCACACACGCACACACGCACACACGCACACACGCACACACGCACACACGCACACACGCACACACGCACGCACATATGCACGCACGCAAGGACGCACGCACACAATTGTAATGTTTAAAAATACAAATGCATGTGAAACAGCAGTGCATATAACCATACAGCTTGTGATCGTCTGGCTGAAGTATCGGTAACATTTCTTTTGCTTGATTAAATACCGTTATTTCTTGGCTATTGTCATTAACATATCTTTGTATCAGGTCATGCTAAGTTGCAGAGGCGCGACAGGTTATTTAGAAAAAATTAAAGCAGCTAATAGGCCCAGGCCAATACCTCCCGAAGATATATCACTGTTTGTAAAACTATCGCCCTGTTTAACACAGAGTTGGCGAACTTGGAGAGAAGTGTGTGACGTTGTGTGAAGCCGTTCTGTGTTGCGTGTGTTGCAGGAGATCGTCCTGAAGCGGGCGGCCGACCTGGCCGAGGCGCTCTACAGCATGCCCCGCAACCCCAACCAACTGTCCCTACCCCCGCCCCGCTCGCCCGCCATCAACAACACGACGAGCTTCAACAGCTACACCGGTCAGCTAGCGGTCAGCGTACAGGACGCCACCAACGGACAGTGGGACGAAGGTTGGTCACATCGCTACCCGGCATTCAGCTTCTAGTCGCCAGCTTGGTGAAGACTTCCCCGCCATCACAGCACCGGTGCATCGGGTTCGCAAGCAACCGTCTGCACCGCCCGTTCTTGCACCGCACGAAGGAGAATGCTAGACGCCTTTCCGGTGGCGTGACGTCGCGCGCACGTCACGTGAGCACCGCGAAAACGAGGCTACAAACATGCGCGTGGCGAACGCGGCTGGTTGCAATGGACAGAATATATTTATAGAACAGTTGGTAGTAGCGAGAACACGTCGAGGAAATGTATTAATTCTTGTAATCGTCACGGGACAGTGCACTCGGAGTTACTTTGGCAAGTGTCGCCTGCACATCCGTGCATCTACTCCGGGCGGCAGACGGTGATAGTGGAGGACCGTATCTATGTGCGACGGGCATATCTCTAGCATCAGGACGCCACGCATACTTCAGCTGTTATTTGGCGACTCCAGCAGATCCTAATATCGATTCACAGTTGACTGACGCGGGATGAGAAAACTAAATTAATTCAGCACCGCGACTGCGATGCTGCTCGTGCCCTATCACACTTTTGGTTCGCTTTCAATTACCGCTCCTGAATTCTTTTTTCACTATTTACCTCCAAATTTGAACGAGTCCGAGCACTGACGTAGAACGGGTTGACTCAGTTGAATATATCGCTTTACCTCTGACATCCGCGTAGCTCAAGCCGCCATCTCTCGCCCGGACTAGCCGCAGCCGTCGCGAGGCAAACGTCACGCGATGGTCATCTCTGATCTCAGCTACCTCAAGCAGTGGACAATATGACAAATGTCACGTGCTGCTAGGGGCGGCTATGCGTGTCGAAATGCGATTCTAGTCATTGCGAAACGTGTACTGTCAATTAGTCTCGTACAGCGTTTTGCACATTCAGATCGTACAGTGTCTTGTACAGTAAGCTCGTATAGCATCTTGTACAGTCAGCCCGTACGACTTCTTATACACTCCAGTCTCGTGCAGAGTTTCGTGCACGAAGCACGATGTCTGCACACGATGCTCAGACGCATATTCGTATCATATATTAATTTGTAATATGCTATGTTGTTGAACGTATACATACGATAATAAGTATTAGTAATGATTATACGCCGATACGACACGTTAACAATACGATGTATATGTATATGTATGTATGTAAGATTGTTTCTTCTCTTCTAACTTTCAAAATCAACCTGGATTCTGACGGCAACATTCGTCTCGTTTCATGAGTCATCATTCATCCATTAATGTAGTTTCAATGCGGCTTATTTCGCGAGCGCCGTTTGAGCTGTTTACATCGCTCAGACCGCCGCCGACTATAATTCTCTTGCTGCGATAGTTGTACAAAACGCCGTCAGATCCAATAGTGTTGTTCGTCTCCAGTCTATACTATCGATGTCACATTGTTTCAACTTCTGCTCTTTTATATAGATATTTCAATAAACGG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	COE

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01833	TIG	IPT/TIG domain	Domain	Interproscan
PF16423	COE1_HLH	Transcription factor COE1 helix-loop-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002909	Domain	IPT domain	Interproscan
IPR003523	Family	Transcription factor COE	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR032201	Domain	Transcription factor COE, helix-loop-helix domain	Interproscan
IPR038006	Domain	Transcription factor COE, IPT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10747	TRANSCRIPTION FACTOR COE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf11524_7.6 global RNA-seq network