Detailed information of PE_Scaf11499_1.4 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf11499_1.4U1 SMALL NUCLEAR RIBONUCLEOPROTEIN CSuperscaffold62333748623348416+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06220zf-U1U1 zinc fingerDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000690DomainMatrin/U1-C, C2H2-type zinc fingerInterproscan
IPR003604DomainMatrin/U1-C-like, C2H2-type zinc fingerInterproscan
IPR013085DomainU1-C, C2H2-type zinc fingerInterproscan
IPR017340FamilyU1 small nuclear ribonucleoprotein CInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR31148U1 SMALL NUCLEAR RIBONUCLEOPROTEIN CInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0000395Biological ProcessmRNA 5'-splice site recognitionInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0030627Molecular Functionpre-mRNA 5'-splice site bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf11499_1.4 global RNA-seq network
TOP