Gene detail

Detailed information of PE_Scaf110_18.3 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf110_18.3	HEAT SHOCK PROTEIN HSP-12.2-RELATED	Superscaffold2	41314939	41317967	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf110_18.3

ACGAGTTCCCACAGAATATTGCAGTGCGCGTTAAAACCTGTTGACAATCATCAGTCCGCCTTAACCATTTTCTTGGCTGTAGCTGTATAGCGCCGATATAAAACGAATTATACCATGTCTCGTTACATGATCCCGTTTGAAAATACACGAAGAAGGAGCTTCTGGGATCTGGGATCCGACCCCTGGGGAGTTGATTTTCATGCTCCGTTGCGCCTGTTTGAGCAGAATTTTGGCGTTGGAGTCGACGACGAGGAACTGTTCCCGCCAACACTTTTCCGTGGCTGGTACACGAGGCCACGGCGCCGAGGAACGCTGCCACAGGAAACGGGACTGTCGGAGGTAAGTTAGACGTTTGTATCGTTAAAGTAACACAATGTCAAGGTAAAGTTAAATCCTGAAGAATTGTTTGAGGGCAAAACGCGCGAACAAAATGGGCTGGGAAGAGAAACGTGGGAGGAGCACGAGCGCATGCAACCTATAAACACGATGTGTGCACACGATAAGCATAAACGTCGGAACCGGTGTGGGGGCCGGGGATGGGGGGCTCAACTCCCAATGTTAAGACGGGACTTAGCCACCCCTCACCCCAATATCGAGTTGTTGTTTTTAATGTGGGTGAACACAATCCCAGTTGGTACTTCGGAGTAATTTTTAATGGGATGTTTACAAGAAAATATCGTAATTGTTTCGTGGAAATGTTCAACAACACGCATGTACACTTTTTTTCGTAGTACACTTCAGAACGTCAACACCACCGCTGCTGGAAAGAAGATCCGCCCCACGCAGTGAAAGGAGTTTAATCTCCTCCTCCCACCTTGATTACTTAATTAGATCATTAATATTTCACAAACCATTGCAATGACGTCATCAGGAATTATTTGCGCAGACGACACTAAGACTACGATTTCGTCGATGCGCAGCTGTGGGGGTTGATAAGAATAGAAATAAAGCAAAATTAGTTAGTTTAAAAAGCCATTAAATAGGCATGTACGTACACACACTATGGAATGCTAATCGTGGGTTTTTGGGTCTGTTTTAAATGTCCAGTGTGCATGTCAGATCCTTATCAGAATTCGATATACTCTCTTGTACCGTCAGTGTAACGTGCAGTCACACTCGCTAGCACACTCTCCATGGGTTATAACGCATTAGCAGCACATTCGACTAATATGGAGAACTTCGGGTTCGTCATGTAGCGACGTGGACTGATATATATAAACCAGACAAGCTTTCACGAGCCGGCGAATAAACGATCGACCAAATGTCGAGCTTGAAAAGCGACGATTCGATGCCTTCTCACGGAAACGATCGGTCGTTGTCGTGCCGTGCTTACAGTCCCAATCAAAAGCTCATTATTTCACGTCTGCTTGTATTTGCTCCTCTCGATCAGAGTACAAATACAAGTTGTATATTTAAATTTCACTCGAGCGTGTCAGTATCGAGATCAGTAGCTGACATGACTTTGGATTAAGGGAATTGACCAACTGCGTTGTGTGCGACAGGGGTGGATGTTGGCGTTTGATGAATTATCCGAAATTGTTCAATGCAACAAAACACCAGAGAAATTATAGTTTTTTTGCGAAGCAAATGAAAGAATACAAGTTTATGTATCTTCACCCGATGCAGTGTTCTTGTCATAGAAGTCTACCATGAATTTCTGCGACAACCGGTTGGCACGCCTCGCTATCACCTATGTTGCGTGCTCTTGTTGACATGGTTCTCGAACGAGAAATCGTTGTTTCTGCTACTGAAAATGTTTGATTTGATATGGGTTGACAAGGCTAATAAACTATGAGGTGACCAATTTGACGTGTATTCAATCTTACAGAGGACGACGTATGATTGGACACCTGTGTAAACCATCCATGAAAATGGCGCACCATCTGGAACGTTTTACTTTGAACCATAGCCATAACGTATTTAAATAACAGTCATGTCTTGCATTTCGTGTTAGCAGGTTAGCAACGACGACAAAGAGTTCAAAGTGAACCTGGACGTGACCCACTTCAAGCCGGAGGAGATCAGCGTTAAGGTTGTTGACAACCAGGTGACGATTGAAGGCAAACACGAGGAACGGGAGGACTACCACGGCTTGATCCAACGGTACTTCAAACGTACCTATATACTCCCAAAGGTGTGGCACAATTTCTGGCTTGTCCATAATACCATCGCATCAGTTTTATTATTGCAAATTTGAAGAAGATTTTAAATACTTATAGATAACGGGCTGTTTAAAATTACGACTATATTTTGTATAAATACGCACAATTCCATGAGCACTTACTTTGGAATTACATGGTTAGCATTATCAAGGTAATAGAATGAGTACACATTATTAATTAATTTAACACATTTTTATGTAAATTTTCTGAAATAATTATGAGTGCGATAAAGCTTAATTTTAAAAATGTCATACGCAAAATATATATTATTAATGGTATTATTATCATCATCATCATCATCATTCTTATCGTTAAATTATCATTATTATCAGCCTTAATGCAGCAATGTTATTATAGTTGTGCATGAATGCAACCCCATTTCTCTCCAGGATGTGGATTATGCGTCAGTGAAGTCAAGCCTTTCGTCAGATGGCGTTCTATCTGTTGCGGCCAACAAGAAAGCTATTGCAGCACCCGAGGAGAGAGAGATTCCCATTGAGCTGACTGGCAACAGAGACGTGGAACAGTGAACGATTACCATCACAGTGTTATCATTCTAAGCCTATCAGATTTCACAAAACGATTATGTTATACTTTGTAAACCTATATTCAGGCAATATACCGTAGTGTACTAATGATTTTCAACAATAATTATACTACAGGTTATTACAAAGACGCTTGGCGTTTACAAATTAGTTTAATCATCGTTTTAAAACTGTGGTTATTGAAGATGGTTACTTTTCTTTCACACGATCGCTGTAAAGACTAGTGTATATTTAGTTAGATTGTTGTATCATGCGTATTGTACCACAGCTTCTAGACTTGTGATTCTGTATTGAAAGAGTGTGAATAAATTATAGATACATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00011	HSP20	Hsp20/alpha crystallin family	Domain	Interproscan
PF00525	Crystallin	Alpha crystallin A chain, N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001436	Family	Alpha crystallin/Small heat shock protein, animal type	Interproscan
IPR002068	Domain	Alpha crystallin/Hsp20 domain	Interproscan
IPR003090	Domain	Alpha-crystallin, N-terminal	Interproscan
IPR008978	Homologous_superfamily	HSP20-like chaperone	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45640	HEAT SHOCK PROTEIN HSP-12.2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005212	Molecular Function	structural constituent of eye lens	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0009408	Biological Process	response to heat	Interproscan
GO:0042026	Biological Process	protein refolding	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf110_18.3 global RNA-seq network