Detailed information of PE_Scaf11020_2.2 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf11020_2.2SURVIVAL MOTOR NEURON-LIKE PROTEIN 1Superscaffold111318743213216831+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06003SMN_TudorSurvival motor neuron protein (SMN), Tudor domainDomainInterproscan
PF20635SMN_YG-boxSurvival Motor Neuron, YG-boxDomainInterproscan
PF20636SMN_G2-BDSurvival Motor Neuron, Gemin2-binding domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002999DomainTudor domainInterproscan
IPR010304DomainSurvival motor neuron, Tudor domainInterproscan
IPR040424FamilySMN complex subunit Smn1Interproscan
IPR047298DomainSurvival motor neuron protein, Tudor domain, eumetazoaInterproscan
IPR047313DomainSurvival motor neuron protein, C-terminal oligomerization domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR39267SURVIVAL MOTOR NEURON-LIKE PROTEIN 1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf11020_2.2 global RNA-seq network
TOP