Gene detail

Detailed information of PE_Scaf11016_4.9 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf11016_4.9	COILED-COIL DOMAIN-CONTAINING PROTEIN 103	Superscaffold6	55468004	55470642	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf11016_4.9

TTATTTAGGCACGCTATCTGGGTCGCGTGCCGGACTTGCTAAATCGGTAAAGCTTATATAAATACCGTATAGTAAATAAATCATCAATTTTTTTTGAACATGAACGTTTCGAAGCTGGTAACAGTAAAGTATGCTTGTTCAATTTTCCAGAATGTACACAATTTTAAAATTTTACATATAGTAACTGAATTATCGCCCACATCCGGTTTGGGTCTGGAATAAGTGCCAGTGAATACTCGTTAAGCTTCGCGCATTCCTCGCCTTATTCACTGCGTATGCAGTACTTGGTTTGTATTGCACTAAGTTTTGTTCTTCTATATACTTATGGTATCTTTTTGAGACAATTAAAAAATGTTAGTTTCCAGGCTAGCTGTCACATTATCCACGTTAACTACAAAAAACGTCATGTTTGACTTTATGAGTATCAGATCATAAAAGTTTAAATTTATGTTAACACAGATTGACTTAAAGTATTGCAATTGTCAAAATGGAATATTATATATTAATTAAAATCTTACCCCACACACAGTAGTGAAGTATGTGTGCGTGCGTGCATGTATGATAACGTGTATATATATTATAAACTGTAGCCTGTAGGTTTTGTTTGATGCCATTATCATGCCACTTTGACCACTCTCACCATCAATCCATATACCATTCAATGCAGTTGAGATTGTTCTGCTTTATTAAATGTTAAGTCCCCGGAATTGCATAGCTGCAGTCCGATGTTTTTTTAGTCCTTGTTCAGCATCATCGGCAATGCTACACATGTTTGAAAAAGGACCTTGTCTATTGTGAAGTGGCATAGCTGGTGGAAGTGGATCATGACTTTCATATTATGGTAATTGTACATCCTGTTCAGGAAATTGCCAACAACCAAACAAACAATACCTCAGTGTATTTCTATTTTACAGACAAATTAAGTTATTATTACATATTAGTTTTAACACTTCTACTTTCAATGGACTATGATTGATTGCTGTCAAAACAATGCAAAATATGCATTATAAATGTTTCAGAAAATGGTTTCCAAGCACGATGATGCGGTTGATTTTGACAAGTTAGAAAAGGAACTGAATGATGCGCTGGACCAGGAGCAGAGATATTGGAAAGAAAATGATGCCAAATTCAGAGCCGTTGACCAGCGGGTCGCCACGTATGATGAGTTCAGGTACAAAGCAATTCTTGTATTGTTGAAAAAATATTATGACGGCGTAAAATTTGCTATTTTAATAGACTGCAGATTATTTGTTTAATTATGGATTATTTGCATATACCTTGGTCACTATTTATATTACGATTACCTTATTAAAAAAATTGTGACATTTGACAAAATAATTAATGTGTTTTTGTTGTTGTAATTATGCGTCAAACATTTGCATATTTTCAGGGAGATTGTGCTCGCAGCACACTTGAAACCACTTGAAAAAGAGGACAAAATGCCAACGACAGGTTTCCACCAACCATGGAATACGATGGCGGATAGTTCTGCTGCTGGTCCTTCAAAGCAATCTCAAGACACAGCACTGGTATGTTAAACTTTAATGGCAGTGGTGAGGCCGACATTGATACTGGTCCCTAATTTTTTTGTTTTCCTTTTTTGTTACTGATCCGCTTTCACTGCCACTTCTACCACCTGTCACCATCTCTCACTCTCTCCACTCCCAGCACAATCCTGTCAAATGTCTCTCCACACAACCCTCCCATCTCAGTCGTGGTCTTCGTCTTCTCCTTCTATCTACCCTTCATATATATTTTATCTATCACTAAACATAGCCAGAACAATGTATGTCTCAAACTTTAAAATAAAATAGTGTTTCGGTAGTATGTTATAGTTGTAAAAAATATGTAATAAAAAGTAACGTAATAGCATCATTACATACCTGTACATTACAATTAATTGCCCTGTATTGTGGTTTTCAAATTAAACAATTAAAAAATATTCGACTAATGCCACATTGAGCCACAATACATACCCCACAAATTTTTATCAAATCCTAAAAGTAAAATTGTACGTTTGTTAGTATTAAAAAAGTCTTCTTTTTACCCACCATTGGCAATCTAACTGTTACTTTACCTTGATTGTTGCGTTATTTATACTGCAGGGCATGATCAAACTACCAAGCAACGGACATGAGTTTGCACTGAGCTGGAGACGATTCAACAACAAAGGCACTGACAAATACAGGTATCTCTTGGACATTGGCTCTCGGCTTCTGGGAGACGTTTTCAAGTCTGAAATCAGCTTCGGAATGCTTGGTGATATACTGCTGGTGTTACAGCAGCACATGTGTCCTGAGGATGTCACTCAGATTATCGACATTTTAACAAGTCTGTCGCATGCTGGTAGATTTGGTCTGTCTGTGCAGTTTTTAAGTGGTGCAGAGAAAGACACAAGTACACAGCTGTTCAACCAGATATACAAGGCCCTACAGAGACTGGAGCCAGAGGCTGTCAGGAATGAGGCTGTGGAAACATTTAACAGTTTGAAGGAAGTTTATGAAATATAAATATGTGTTGTTCTGAATATGGAGGTATGCTGTTGATTTGCTGATGGCATTTCGTTTTGCCAAAAAAAAAATGATATGTATTATTGTTAATGTTTAATAAAGTGTAATAACTTTGATTATAAAATAATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13877	RPAP3_C	Potential Monad-binding region of RPAP3	Domain	Interproscan
PF15867	Dynein_attach_N	Dynein attachment factor N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025986	Domain	RNA-polymerase II-associated protein 3-like, C-terminal domain	Interproscan
IPR031733	Domain	Dynein attachment factor, N-terminal	Interproscan
IPR042422	Family	Coiled-coil domain-containing protein 103	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28572	COILED-COIL DOMAIN-CONTAINING PROTEIN 103	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003351	Biological Process	epithelial cilium movement involved in extracellular fluid movement	Interproscan
GO:0007368	Biological Process	determination of left/right symmetry	Interproscan
GO:0036157	Cellular Component	outer dynein arm	Interproscan
GO:0036159	Biological Process	inner dynein arm assembly	Interproscan
GO:0070286	Biological Process	axonemal dynein complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf11016_4.9 global RNA-seq network