Gene detail

Detailed information of PE_Scaf10_0.6 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf10_0.6	GLYCINE N-METHYLTRANSFERASE	Superscaffold8	12888927	12893287	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf10_0.6

TTGTTAGAAGAAGTCTTGGTTGTATGTTGCAGCGTCGAATCGATACAGTCGTTAGAAGAAGTCTTGGTTGTCTGTTGCAGCGTCGACTCGATACAGTTGTTAGAAGAAGGCTACGACGTCGTCAGCACGGACTACAGTGAGCAGATGCTTGATCAAGCCAGGAACGAGCGACAAAGACGGCGAAACGAACCTGCCTTCAGCAACTGGGGTAACAATTACACTGGACAACAACAAAACACTTCTCGACTGCTAATAAGGGAAATGCAGGTGTTCTTGCTAAATCTGGGCCGCTGATTCCAAATCTGAAGTCAGTATTTAGCCAGCACGTCAGGTTTTCAAGTTTTATGTGAAGCAGTAGAAGGTAGATTTTCTGAGGGTCTACCAATGCCTTATGCTGCACATTGTACAGGCCAACTATGTGCTCATGTATTTCAGATCAGTCTTTTACAACATAATGATTGCTGTTATTGCTATCCTATGGGGAGATAAATCACCTTTAGATCACCACAGATGTTCCACTTATGATCTGAATAATTAATACCTTCCAGAATGATTTCCATAACGGCATGAGGTACAGGTTCTTTGTTACCATTGTGTAACAACACAGCTTTGAGGCTCACTTTGCTGGAGTCTACGAAGAGGCTCCATTTCCTCGCTCAGGCATGAAGCCGGAACATCAGTACAGAAACAAACATCATTATATATCTTTAAAAAGGCAGCTAACTTTCTGTGGCGATCGCGGAAGAGGGATTTTTTATCTTCCTGTAGGATATTCCAAATATTTTGGCCGAACGTCATCACGAACGCCAAGCTACACAGGAGAACTGCTGCCAAATCCATCACCCAAGAAATCCAAAGGCGAACACATAGAACACATGCTTTTATTGCAGTAGCAAAATCTTTGTTGTCCAGTGTAATTAGAGCTGACTACGTGGGATAAGTTTTTATTATTCTAATAGTATTGCGATAGTTTTATGTATATATAAATTCGCCAACGTTTGGTTTATTATTCTTGACTTATCTATCCATGTGTTTTTAAATGTTTACTTTAATTACCACGCGTATAATACAACAATAAAAAGATACGTCGCTAAAAGGTTGACCATAAGTGACATCCTACACGGAATTAAACAATTAGCAGAAGTACTTCTGGGGTATCGGACGGGAGTGATGTAACAGTGGGCGGTTTTAGTCATCTGTTATTTTTTTAATCTTAAAATGTAGTGACGCAACATATTTAGGGTGGAAACTAAAACCAAAGGGAGCACAGTCCCTAATCCCTTCCACAGTCCCTAACCCCTGCTTCTGTTCACTCAGCTGTATAATTGAATGTGTGGTGATAAACAATAGTGAACCATTGGTATTCGCGCAATAATTGCAACGTTGCTGAATATTTCAAAGAAATTTAGTTTGAGTTCCAAAGAACAGATTTTCCATTGGTGATTTTTAAGGCACAATCCTTTACTTTCGTCTTAAAATTACCTCTAATAATATCCTTTTGTACCAACAGTGATAGGACGGGGAAACTGGAGTACCCTGCCGGAAGATCTGCGACGTATTGACGGGTTGCCCAAGGCTGGTTTTGATATCGTCTTATGCCTGGGAAATTCATTTTCCCAGTTACCCGATTTCGAAGGCACAAAACAAAACCAGAAGACGGGGTTAACGAATCTGTTCGCGGCCGTGAAGCCCGGTGGAGTTCTTATCCTCGACCACCGTAATTATGACGACATTCTTGACCGCGGAGTAGAACCGGTGCAAAACGTTTACTACAACAAAGTGCGTTCATAAGTACTAATACATTATGATGATGATAACGATACTATATACAACAAAGTGCGTCCATAAGTACTAATACATTATGATGATGATAACGATACTATATACAACAAAGTGCGTCCATAAGTACTAATACATTATGATGATGATAACGATACTATATACAACAAAGTGCGTTCATAAGTACTAATACATTATGATGATGATAACGATACTATATACAACAAAGTGCGTCCATAAGTACTAATACATTATGATGATGATAACGATACTATATACAACAAAGTGCGTTCATAAGTACTAATACATTATGATGATGATAACGATACTATATACAACAAAGTGCGTTCATAAGTACTAATACATTATGATGATGATAACGATACTATATACAACAAAGTGCGTCCATAAGTACTAATACATTATGATGATGATAACGATACTATATACAACAAAGTGCGTTCATAACTACTAATACATTGTGTTGATGATAACGATACTATGTACAACAAAGTGCGTTCATAACTACTAATACATTGTGTTGATGATAACGATACTATGTACAACAAAGTGCGTTCATAAGTACTAATACATTGTGTTGATGATAACGATGCTATGTATGGTTTTGAGTTCATACACAATTTAGCTTCATGTACTACACGATTAAAGTGCATTCGAAATTTGGATAATTCCGATAATAAGAAAATGTCAAAACTCACATTGCGCAATGGCAACGTTATCACTTGTGTACAAACAGATAGATCAGTTTACTCGATCACCCTGACCCGGGTCGAATTGTCCAATTACGACAGATTCATATAAAACATTTTATTCATTTTATGTTATTTCATTTTGAAAACGGTATTACGGATGGCACAAGTTGAGGTTGTCATTGATATTGGCAACACCTTCGGAGTATAACATATCTGATGTACAGGTTTGAGTGTATGTGTATATTCTGTCAATGTAACCTACTACTGAAATAATATATTTGTAATTAAATATGTTTTCATAATAATTTGTGCATGTGTACTACCATTTATATATTGAGTAGCTATCAATGAACGTCAGCACGGTTCGCAAACGTAGACGACATCAACCCAATATGTTTTATTTCCATCTGCTATTTATCTGTGGTTATTTGTACTGGTCTACAGAGCGACTTCATTCAAGATTTCCAAGTGTCTGTGAAGTATGCGAACGGCAAACCGATCTGGATAACACTCACTCACAAACTTCATCAGTCTGCAGTCAACAACGGAAGCGATGTACAACAGACGGAGAAAGCTTCTGAAGACAGGTAAGTTTCTGTCTAGAATATTGTTGGTGTCTCTTTGCATTGGCGAATATTTTGATCTCTACCCAATTGACTTCACATGAAACATAATAGCGAAACAAAAGACAACCTGTTGGTGTTATCCACCTAAAAAGTTAATACAAACAAACTATTTGGAATTCTAATAAACATTTTCATGTCAGTGGTTAAATCGGCACGCCGTCTCAAAGAGGAATATTCCAGTAACATGTCCGGTATCCCGGATTTTGGATCTTGCTCATGGCTAAAGGTTTAGCCAATAAGCACCGAGCTGTGACGTCGATTATGACGCGCCAAGTTCCTAGTTTTGCTTGACATAAACACGAACACGCCGGTTCATTTATTGGTTTTTCACATTCCCTTCGATTCAGAAACTGACTTAATTTTGTTATGTACATGAACATCTATTATAATGCCATACCATGCAACATGCGGACGTATATTTTACAAGTTACAGCGCCACAGCAAATTCGGCGATTATTTACGTCGTAAACTGTTGTACTGGCTATGGGGATATGAATATAAACTTCTCACAATAATACAAATAACAACTTAAAGGAAAGTGGCATAATCAGCTGAAAACATATAATTACAAATTCTACCAAATGATTGACCAAAATATTGAGTTTGCTGAGCATCTAAACTAGTGTTCTCACTTCGGCGACCGGCAAACTGGAAAGAGTAGAAACTCGTGATGTCAGCCTTTCTGTAAAAATGGCAGTGTCCCTACACCCAGACTTGAGTGAGTGAGTGAATGAGTGAGATTTTTAATTTACGTGGTTTTAATTAATGTATTTAATAACATTATTTATACTACAATATATTATAATAATGGATTCGCTTACTTGTTTCAGCCAGAATTTCCGTTTGTCCTACTACCCGCACCGTCTAGCGGACATCAACAGGTTGATTCAAGACACGTTTGGAGCCGATACCAAACAGACGATCTATGCTGACTTCAAGCCGATTGGAGAGGTGCAGAGACCTGGTTACTACGCTCATGTCATTAATAAGAAGTCGACTTAAGTTTAGAATATACTAATGACTGGCTCCAAATCACGTGTTCGCGGTATTCCACTCTTGTCTCGGTCGTTTTGGCAAGCTCCACACACTCAAAGCACGCACCACGACATTCAAAAAATCCACACCTGTTATGAAGTTATAAAGGCATATATATATATATATATATATATAATGCACTTGCTGACACTGTTTGTTTAACAGTGACGATACATGCCGTTTTGTCATTAAAATCATCTTCAATGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08241	Methyltransf_11	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013216	Domain	Methyltransferase type 11	Interproscan
IPR014369	Family	Glycine/Sarcosine N-methyltransferase	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16458	GLYCINE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006111	Biological Process	regulation of gluconeogenesis	Interproscan
GO:0006730	Biological Process	one-carbon metabolic process	Interproscan
GO:0008757	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0016594	Molecular Function	glycine binding	Interproscan
GO:0017174	Molecular Function	glycine N-methyltransferase activity	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan
GO:0046498	Biological Process	S-adenosylhomocysteine metabolic process	Interproscan
GO:0046500	Biological Process	S-adenosylmethionine metabolic process	Interproscan
GO:0051289	Biological Process	protein homotetramerization	Interproscan
GO:1901052	Biological Process	sarcosine metabolic process	Interproscan
GO:1904047	Molecular Function	S-adenosyl-L-methionine binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf10_0.6 global RNA-seq network