Gene detail

Detailed information of PE_Scaf10237_7.2 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf10237_7.2	VISUAL SYSTEM HOMEOBOX 2	Superscaffold8	30805927	30815541	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf10237_7.2

GAGGGTTGACATTCGCCGTGTGGCGGCGCTGTTGTCCCTACCATACTCGCAGCGGGGTAGTCGCATCCACCCCGTCTGGCACGAGAATGGTGTATAACTGTATATGCAACACGCCGTGCAGTGCGGCTGTACAGCCGGGCGTTTTCTCTGGGGAGACGGCGACCGTTATCGCGGCATAATGAAAACAAAGAAGCGATACAACCTTAGGGTGATATTAGCGGGATGATGTCGTGGGAATATCATGGTTGTCATGGCAACTGCATGAGTGAAGACATTAATAACAACCGCGTACATACTGGGTGAGAATGTGACGTTAACCGTTATCCAATCAACAGTCTGGTTGTTGTGCGTTTCTGTAACCTTTATGAACACCTGGGTATTTCTCTGTGCAGAAAATGACGACTTGCGTTGTTTCGATCCCAAAGACGCGCTGCACGGCCGTAAACAAAAAAAGAAAAGGCGACACAGGTATTTGTTTCCGAATTCATATCCTGTTTATTCCCGGTGAACGTTGTTATAGATCGAAAAGGTCGACTATGGTTGCCAATATATTTTTAAAAGGATAATTTGTTACATATCGTTGTATCCAGTCCTAAGGGCTGTTCAAAACGCTTTACAGTTTACTCACTGGCATGCCTGTTCAACCAAACAACATCTCGACTTCTCTGTGAAGCTTTCAGCCACGTTGCAATTAATGCGCGAAGAATTTACTGATGCTGTTTTCCTAAATTTATCTTCATAATGGTCATCGCCAAAAATAATCTTGATTACCAATAACGGTAGTATATAGACTGCGCATACATGGGTTCGTATATTATATATCAGCGAATGAATGAGTGTTTGTAAAAAAGATAAAGATAAGTTCTTATATAGCACAGTATCCAGTCGTTAGGACTGCTCAAAGCGCTGTGCAATTTAGTCACTGGCAGACTTGTTCAATCGAACACCATCTCGACTTCTCTGGGAAGCATTAAGCCACGCTGCTATTAATGCGCGAAGAATATTCGTACACAAATATCTACCGCTGCCTAAATTTATTTGAGCTTTTTCTGTTACGTAGAACGATCTTTACAAGCTACCAGCTCGACGAGCTGGAGAAGGCGTTTAAGGATGCGCACTACCCGGATGTGTACGCGAGGGAGGCGCTGTCTCTCAAGACAGACCTACCCGAGGACAGAATACAGGTGAGGGCACTAATATGTCACCTCTGTGCCACAGTGTACACTGTACATATACATTGAATGCACACTTACGCATGCACTCACGCATATAATTTTATATAATCATTCTATACGTATGTATGCGTGTATGGTGTACGTGTGTGAATGTATGTATATATATACATAATATTTATATACATATAATATTTATATACATATAATATTTATATACATATATATACATATATATATATATATATATGTATATAAATATTATGTATATATATACATACATACATACATTCACACACGTACACCATACACGCATACATACGTATACACACAATACCGGTAGCATTCTCTTTATTTCCCACCGGTTACACCCTAGACCATAGCTTTGTTGGAGTCATCGTTGAGATGCAATATAGGAAACTGAGGAAATGCATAAGTAAATGTCCTCTTTTTGATTTTAATGATACACCTTCAAGCATACTCAGAATATATATATGTATATATATATACATATATATGTATATATATATGTATATGAACGAGAGATGTGTATAATTCCTGCTTGCATTTACTGCATGTGTACATAAGCTAATCTGTATTTGTTGAAATTAATAGATAACGGATTAACATTATATTTTATGAAATACCGGTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTATATATATATACATGTATATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGGTATTTGATGAAATATAATGTTAATCCGTTATCTATTAATTTCAACAAATAGAGATTAGCTTAAATGTACACACGCTGTACATGCAAGCAGGAATTACACGTCTCGTCCCTGTCGCTCTCCTAAGCACGAGCTTACAATATATTGGCATTTGGTATATGGTCGTTTGAAGAATGAATACTGAAATTGTGTTTTACTCAACTAGCAGAACAACCCATGGATTTATGTTTCCTTGAGTGTGGTGACAAAATAAATTGTATATCATTTGATTCCATGATTGCACCGTTAACATATAACATACAATTACAGGAGTGATCTTGAAACGGGTGCAGTGTGATTTTATTTATATAAGGTTCATATCCAATAATGGTAAATTACACGACCAACACGAACGTATTAACTTATACACACATTTTAGACATACAATAACGATAATATATGATATAATTTGCTGTTAAATGAAACATTCCGTCCTAGAGAAGCAACAGTTGTGAAAGATGAACCTAGTCAAATAATTATATTACAGCTCTGGAGAAAATGTAATGTTCTTAAATATCATATTACAAAATGTTAACTATATATATAACTACTATTTATTGATATGAATTATATCAAACGTATCAAATATGTACAGTTACATAATTACTTAACACGCTTCTGGATAAATTGCATGCGGACATATTAACAAAACTAAATAAATGGCACTTTGCGTCTGACTATCGCTAGGCAACTTCCGGTGTAATGCTTCCTGTCAACAGTTTTGACAATCAATTTGAAGGAGTTTAATTCTGGCACTGGCTGCGTTTCTCGATGAGTCGGTCCGTCGGTGTTCGTGCGAAAGGCGAGTAGATGCGCCGACCTCCGTATATGCGGAAGCATAAGCGGACGATGTTTGGCCGCGTGCCCTTCAATTACCTGCTTATTACCGCGGCGACGCGGGACGCGGGAACGTGAGCAAGGGGCAGTTTTCATTTCCTAAGGTCGCGCTAATGAAATAACGTGCCTCCTTGATATTTCCCTAATTTGCCGCCGTGAGCTCGAAGACGTCGCCTCCCTGACAGACGCATCCACCAGCCTCGTCACAAATCTGATTTCGATTAATTGCCGCGCTAACGACACGGCGACGGTCGATGGCGTTGAGGCAAATTCGCCATTAGACGCTGCGGCGACGCTCGCCTGAAAAGATGGCCTTCCAGTCGACTGGCCAGATTAGGTCTAACTAACTGTCGACTCGGCGCTACAAACGGTTGTATTCGCCAGAGATCGGGCCAAGTAAGAGGTTGAGCGGTCGCCAAGTTCTCTGATTAACACTTTGTACGCAAACTCCTAATTTCGTCCGGCGCTCGAACCTAGCCTGCATTATCTCTAATTAGCAGTAGCCGTAATGATTTCTGTGCGGACTAATGATGTTAGATAAACAGCAGGGACAATATATCATACAACCGCAATAGTACGCATATACAGGGTGTCAGGTATGTCGGTACATAACTAATGTCATAGGTACACAATAAATGCAAAAACATTCTGTGTTCCGCTTCAGTTAACGGCTTATTGCTTTAGCCCTAAATCAAAATTTTTATTATATATATATATATAATACCGTTTAAAAACTATGACAAATATCTGTGTTGAATGTTTTAAACCCCCGTCTGTGCACTTCCAATTATTAACAACAGCACGTGCTCGTCTTCCGGACACTGTACTGTCTCCAGGTTTATTGTGTTAATTAAATCGACATTTTATAGATTCACTCTTTGTTCAAGTTAGATTGCGCATGGACTACACAGTTAAATTATTCTAATGTGTCTTTAATAAATATACAGTGTACACTTCATATTTAAAACTTTTATAGTTTCCAGAAGAAATGCTTATGCTTACAATGAACGTCTATGTTTAATCAAAGTACAGGAATCAATTTCTCCAATTTTGTAAACGACACATCGTGTTTATAACGTATAGCAATGTAAATGTTTACACCCCCTTTAAAGATGTTATATAAATGTAGAGCTTCCTATGATCAATTATATAAATAATCTTTTATTAATTCCTTAAGATAATAATGTTCTGCTATCAATCACATCAAATGAAACTTCACACAAGGCATTTGTACGCGTGCAAACATGTGGTGATTATGATAACCAATATTGAATTGTTATGAATGTGTGACACATCAAAACCTTATTTGTTATTTATGAATATATTTAATATTTTCAGTGTAATGTGTTGGTGGTGCTAACAAAGTTATTTCTTTATATATAAACCAATTAAAGATATGATCAGACTAACTAACATGTAGACAGAAGGGACTATATGCATATATATATATATATATCTCTCTATATATATATATATATATATTAAGCGATGCATAAAAACACGTTGCACAACCTCCATCTTCTTAGCCATAGACCGTCTACATTTATCGCTACTGGGTTTCGTTGGATTTTTCTTGATATAGATTCTTTTGTACATATATGAAGCTAGCAAATTGGTAGGTACTATATGTACTAAACACCGCACGGTGAATGTCATATTGCGTGAAATAGATTACTTTCTTGACCAAATTACTAGAATCTAATTACTAAAATCTGCTTTGCTGACCTGTTACTCGCCAAGAGTATCGGTGGCGCCCTCGGCGGCAGACGTAATGCTTGCGAACAGACCACAACCGCCTATCAATCAATAGCACCAATTTTATCGCCGATTTCATGAATTATTGAAACGTGAAATGATGAGGCTGCGAGAACTGATTAGTTATTATTTGCTTCGCTCAGCGAGACAACTTAACGAGCCGGTTTATGCCTATTAAAACCCGCCTCGCGCAGTCATCACAGTTGGTGCTGTGAACGCGAAAAAGTGGTTGGCTGCATGTTTGTTCGTATAATTCGTGGTATTCGATTTGCACGCACGAATCTTGGCTTTTTTTAAACATGTCTTATGTACGGATCGCATTCTAATACGTTGAACATGTTTTGTTTGACTTTAAAAGAGAACAATTAAAACGTCGGTATTGAACCTAAATTGAATTACCTTATGGAAATAATAATAATATATATATCTGTTCGCATGCATTACGTCTTTTCATAATGCACGTTATATCGTGTGCTGGACTCGCGCGTAATGCAATGTAGGTAGGCCTGCATACACCGATTCGCCCACGTGACAGCGGCGTATTAAGCTACATTATCTGATCACGATTTACTCGACGTTCGTCGTGATCATTATTTGCTAATTAGTCGTCTAATTAAGAAGTTTAAATTCGGTGCTCATACAAACGTGTGCGGTGAATTAAAGACGTCGATCTGAGCGCTGACAACAATGGCCCAGGCCGCGGTGGGGCGCTTCCATCTCGGCGCGTGCACGTGCTCTTATCTGTTCGCGACGAATCACATTATGGCAGCCGTCGAGCGCAAATTGCACGTTTTAGATGCGGTCCCTCCCATTGAAGGCGCATCAAGTGACACCGCGGCACGTGTGCCGAGAAATTGCAGGGAAACTGCGAATAATGCACCTTTAGCACGATATGTTATTGGACAACCTGACTTCATAATAAGGAATTAACGTTTCTGTATTGTTTATTTCGGCTAATGGCAGCGCTTAGCGCAAATATATTACACATGTAAATGTTGATTCTTATATTCATGATAGGTTTGCATATTGCAATAATTCTTGAGGCATGAGTGAATGTATGTACATTTGTACGTAGTGTCCACACGCATATACTCGCAAGCATTGCGTGCATACAGAAACACTCACACGTTCACACTAATTCACACACGCACACACATGAACGCACGCATCGTTTTCTTCAAATTCATTGGTTGGAGCCGCATTTCTGTCTCTATAACAAAAAACACGCACTCGCTCTCGCTCTCTCCCTCACTCCCTCACTCCCTCCCCCTCACTCCCTCACTCCCTCCCTCCTCTCTCTATTCCTCGATCAACGAACGGTCATAAGACTGATACATCTTGAAAACAAACACTTGTGACGTTGCTTCTGTTCTCCTCTGCTACAGGTCTGGTTCCAGAACCGGCGAGCCAACTGGCGCAAGACGGAGCGCCGCTGGGGCCGGGGCAGCATCATGGCGGAGTACGGGCTGTACGGGGCCATGGTCCGCCACTCCCTGCCGCTGCCCGAGTCCATCCTCGTTAGCTCCAAGGACACCGCCGTGGACTCGGCAGCTCCGTGGCTTCTCAGTAAGTCTCCGTTGCGCCATTAAAGCCGGGAATAAACTGGCACTTTTCGTCCGAACCGACCAGACCAAACCAGACCAACTTACCACGACTGCGGTGTATTCACTACATCGACTGACACCGACAATGTCATTCTCAACGTGACGCCACAATCAAGTAAACTTGAAAAAATTCGACCACTTCAGACTGACACTGAGTAGCCCCGATTTGAATCGGACGTGTGGATGCACTAGCTGCGCGACACCGATCCGACCAGACTAAATCAAAACCGACTGGTCTGGTCTGGTCGTGTCGGGCGAGAAAATATATATGTATCCTGGCCTTAATTAATTGTCATTGGTGGGTTTATGTCCAGACTTACAGTGTAATCAGATTGACGAAACGTGCTCACGGCCACAGCTATCATTGCTTTCGTTCGGGCTAAAGTTACGTGTACATGGACTGCTTAAACCCATTTGTCTTGATGTCAGTAATGTTATAATTGTTATAACATTACACGAAGGTGTGCACACATTATTACCATTATCATCATTACCACTACCATTACCATCATTATCATCAACATCATCCTCAACATCAGCATCGCCCTCATCATACACTTGTGTCGTTATGTAAAACCAGTATTCTCAGGCGTAATTCATTTTACTCGTAAAGCTGGACGAATTTCAATATGACTCCTATTGGGCACGGATGAATACTTCCGCGTAATCCAAACCCCGGCGGTCTGCTTAGCTGACGCTCGCTTGTAGAGGTAATGTGTAGACCCCAAAAAATACACCCGACATAGCCACGCCAACAATGCGAGTACGCTAGTATTTTCGGCCCACGCTTTCTGTTACCGATACCTTCCGCTTCGCCTAATCACTCGGCGGAAGCACCAGCGAACAATGCAATGCGTGCGCAACGGTAAAGTGATAGTATAATTCGGTCCCCAGTCGACACATATCACACGTCTTGTTGTCACGCTGAAGGCGAAGGTTCAAACTTATTATACTAGATTTGTTTACTGAAAACTGTTAGTTGTATCTCGGGTGTCAAGCTACTGGGAAACAGCTAATCGATATATCGATAACTTTTTTTAGTCCGCTATTTCCACGATCATGAAAGTGCGACTGTTCTATAGACTAGTTTTGACCGCAACGTAATGATTGTATTCGATATCAGTATGTGTGTTAATCGCTTCACTGATTGAATCACTGAAGCTGTCACAGACTGTACTTTTATATAGTCCAGTTGAAACAAGGATGTTATTAGGAATATCACAGCTATACATACTTTTCCGAACCATATAGTGCTCTTGTTACTATATAAATAAGGACATGGCTAGTTGGTGACGTGCGAATGTATAACGTAATAACAACTAACAGAAACAACACAAACGATCTCAGATACTATTCAAACAGTATTTGAGGTCAATGTTCCAAACACGGTGTAAGAGAACAGGCTATTTGGCAATCCAAGGATAGTCAAAGAAAACCATGCCACACTTACCAACATTTACTCGCATCTGAAATCAGAATAACGGCTCATGAACTTTAAAAAAACGATACAGGACAAACGATGGAGCCATGCATCGTGAACAGCTTTCCAGGGACACGTCCTTTGGTCAACTAGATGGCCGATAGCAAACCATAATAAAAAGAACTCGTTCGTTGCGCAGGACGGTGTTGTCGACTGTGCGGTCTAGTCAAGCGAGCACCAGTCGGTGTGGTTGTCTTCTCTTGGGGCCGCCGCAGACCGCCAGACAGCTGTATTGACCGAAGTGTCCCTGCGGTCGACACGCGTGTTTGCCCGGCGCTGTTCCTGACAAATGTGGCTATTTGTTCGCGTTGTCCGGTCAATATTGAGTTGATGATTTGCGACAGAAATCCAATGTACTTAAATCGATAGCGTTGTTTGTGGCAAATACTGCCTGTAGATGAATCGGCAGCAGGAAGAGAGCTTTCCGTCGGTGTGAAGTTGTGAATGGACCCTCGTCGTGTATGGACCGGGGGTCCTTTTACAATGGCGTGGAAAATGGACCCCTGTTAGCAATGACATGTCGATGTGTTGAGTGAATTACAAGTGGTTATTTGGTATGTGCTATAAAAATACAAAACTATGCACAAATATGTCCAAACCTATACTGGTAAACGTCAACAATGTATCTGACAGTATCTTTTACGGTTATTAACATTGTTTTGACAAGTTTGTTAGACCGATTTTCCCTTTCAGACTAGTACATTTTAATGTCTAAACATCAGTAAGCCATGTCTACCATTTTTAAATCACTAAAAACATAAACATTTCCATTTTTCATAGGGAGTCCCTAGACAATGCAGTGGTAAATGGACCCCGTTTTGCGGCCATGCACAGAGGCCGTTCTAGGATATAATCGGGAAATACATTGTGACAGTATACAGTTTATTGTTCCCCTTTTTGTTAGAGAAGCGATTCGCTGCGGTACTTCGATTCAGGGGTACCAGTCTATATATAACTCCTTGTAGTACTGCGTTGTTAGCCTCGCAATGATAGCTGTCTGCATCACCTCTCGTTGTACTATGTCAGCCACTGAATACGTCGTTGTGTTGTAGGCATGCACAAGAAGTCGATGGAAGCGGCTCGTAAGTTGGAGGAAAGCGGAGACGACGACATGTGTTGCGACGAAGGCGCGGAGTGTGGGGAGGAGAACGCCAAGGACCGGGAGGAAAGACGCTCCGAGAGCATCGCCGCCCTACGCGCCAAGGCACAGACGTACAGCGCCCAGATACGCGGCGCGATCACGCGTGACGAGATCGAGGATGCGATCACGCGTGACGACGCGCCAACGACGCAGTCGCCCCTGCAGCAGCGCCACCTAGACGCCCGCTGCAACAACGACAGCAACAGTAGCGGCTTTGAGGCGCCAAAAAATGGCGGCGATGGCGTCAGCAACGATGGTGTAACGACGTGTAATAGTTACACACTAGATCCGGCAAATTAACAAATGACAAGAACACGTGTGCGCAATAACACAGCATTGTTTTGTTTGCTCATGAAAAGAGCTGCGATCTCCTGGAATAAGAGAAAACACGACTTTGTTTCAGGTGCAGCACGACCTAACATACGGCCTTCATTCGTCGAATACTATGTGCGACCCAATAGTTTGTGCATGTATTATATATAGTATATATATATTTATGGTTATATTTATTGTTACGTTCCACTTGAGAACACAGATGCGCCTTGGGCATTTAGCGGAAACATAGACATAGCCACGCATAGGCTTATTTCTGTGACGGTTTTTACAACCTGCGCTGTTCGCCTCGGGAGGGGGAGACGAATGATGAACAGAACATTCGCTGTCTGATTTACGATAAACAACGACGCGTTATTTAATTTTGTGTGTATGGCGAGTTACCCTGGCCTGTTCTCTTGCTTTTCATATGTGTACGGTGCTTGAGACTAAATAAAACAACGTGAATGTT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR023339	Domain	CVC domain	Interproscan
IPR052294	Family	Visual system homeobox transcriptional regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46892	VISUAL SYSTEM HOMEOBOX 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:1990837	Molecular Function	sequence-specific double-stranded DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf10237_7.2 global RNA-seq network