Gene detail

Detailed information of PE_Scaf10076_5.9 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf10076_5.9	RIBOSOMAL PROTEIN S9	Superscaffold6	30506099	30511074	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf10076_5.9

TTTTATCGTGTTTTGAGATTTCGTGTAATTTGTTCCATTTATTATGCCTATTTACTTGTTTACATGCCTGTGTTACTTGCATGAATACAACATGTTATGAATAAAGTTATTTTATCTCACAATATTTATATTGTAGAGGCTCTGAACTACAGCCATGTCGAAAACGCCGATGCAATCCGTGCAAGTGTTTGGCCGCAAGGTAATTCTGTCAAAATGCATGTTGTACCTTGCTAATTTTCTTGCGCCGGTGTTGCAATGCCGTAGGCATGATAAGCGAATATCCGCCATTATAAATATTCTTCTGTCGTACGTTTCTGAGCTCGCAGCCGATATCCCTGTATTCCATGCTTCATGGGCGATAATTAAGAATTATTAGGCGATTAGCTTCTGTTTGCATTTTAGCCGCACTTGTATAGAATCCGGACAACCACGTTTGTTGCCGTTATAGCTATGTTTTGTCTACATTTAAAAAATGCAATAAGACGCAGTATTTTTCTAATGTAAATATTCCTGTGATGATGTGGAATTAATATATCAAAACAGTTACGACAAAATCGAGGTGGGCCCAAAGTATACACAAGTTCAAAAAGTACTGCATTTTTGGTCAAGATATTTGGACGACAGGGTGTTCTTCAGAAGTTTGGTATAGTTTCCCATACATTTGGTAATGCAAACATTGGTAAAGGTGTATTAATGGGTTTGACTAAAAGGCGCACGACCACGAAGTTAACGCACGACCATGTAATACAATATGTTGATAGATAATTTTGCCGTTGATAGTATATATATATACAAGATTGCCACCCAGAGAATTAACTCTAGGTGGCAGGTGGACAAGGAAGCCCTTTGGCTTATCGAGAGTCCGACCCTTTTATCTATGTGTATCCCGCCCGTCTGAGGTATGTGTCGATTTTATTTTTAAACATTCACGCTACTAGCACCCATATGGTTTGTGTGTGCATTATTAAAAATTTTGAGTATGTATTTCACCCAGGAGTTACATAATTTAGGCACTTTATCTGATCTTCCGGACGAGTATTTAGTCTGCACAGTAGCGCCACCTGGCGAATGGAACCGTAAAGTTACCACAAGCGATGATTAAAGTTTCAAATTTTTTACTCCAATGTGAAGAACATATCTGAAATTTGGCGAGCTGCACACACATACCTCCTACGTACCATCAACAGCCCGCTTGGTTACCAACTCTGCATACATTTTGGTCGTGTGTGGTCGTGCGCCTTTTAGTCATACCGGTATTAATTCATATGGATCATTTAAGCAAATCTAATATATGTCAGGCCTTACCCAATCTTGCTTCCTAGCTGTCAATAACAAAGTCAAAAACTATCGTACATAATGGCCTAATATGTATGCTACAAATTACACTTTCTTTATATGATCACAATTTACACAAACTAAACATATTTGCATTACACTGAAGTTCTGATTTATGTATGCAAGTTTCATCAAAACCCTGCATGGAGTGCCACTACAGCTATCAATAAGTATTCAATTTTGACATTAAATAATGTGTTATTTTTAGTACTGATTTTGTTGTCATTTAATACTAATACTATATATTGACACTTGAGTAGTGTAGTGTAATGTAGAATTCAGGTTTCTGCATATATCGATTAACTGTTATAATCCTAATAACTATGCTACTACCATGATTTGCTCAGGACACATATCACAGATATATGATTATATTTTGTAGAAGACAGCTACAGCTGTTGCTCACTGCAAGCGTGGCAATGGGCTGATCAAGGTGAACGGTCGCCCTCTCGACCTCCTCGAACCTGCCATGCTTCGCTACAAGGTGCGTCCACCAACATTCACATTGAAAAAAAATTCATGTTTTGATAATGAAACAATATATGACACAAATACATGTATTGTCGGAATCACTCATGCATGCACATACAATCCAGTCCAAATGGGCATATAAATATATACCATGTATGTATACAGTAATACAAATGTGACATACATTTTTAAAGCATAATGGACATAAATAACAGTGAGAGTCAATAATATATAAGGTTTATCTGGTCTTTTCAAATTTCCACCAGTCCAAAATGAGCTTGGTCCATCCAAATGATGGGTGGATGGGTCTCTAGATAAAGCTATGCCCACAATGTTGTGAAGATTGTTTACAACTTTACATAGTAATGTATTTAATTGCACCAGTCTTCCAATGATGTCTACTTGTTCATGTCTGAAGCTACTGTTGCTGACATCTTGAACTGAGGGAGAATGATAAAGAATATATTGTAGTGTACCGGGCAATATGTTTGAATAAAACATTGAAATAAAAGGGCAGCAGATTGTTATGTTTAATGAATGGCAGTTGTGCATCTTCATTTGCTACAAATTGAATGTATTATTTATTTGATGCCATACTCTGCTTGTACGTCTTTTGTTTGTCTCCAGGTACAGGAGCCTGTTCTGCTGCTGGGACAGGAGAAGTTTGCTGGAGTTGACATCCGTGTACGCGTCAAGGGCGGTGGCCACGTTGCACAGATCTATGGTAAGAGTCGTAGTGTAATCACTGAGGCATAACTGCGTCTTTCTGGATTAGTTCAACCATCGAGGCAATACAGTATAAACAGATGAAGAATGGTTTGCAATGGCTACATACGCGACAATTTAGTAAAATCTGAAGTATCCACTGTAACATTAATTAATTCAGTCTTCTTCATGTCTTAGAAGGCATATGAGAATGCCACATCTATGAGGCTATGAGGTTACACTGACAGATCTCATGTAATTCTTACACCTCTTTCCATGGTCATACTCCATGTTTCCTTAATGCAAGCCCTCCTACCGTCTGATGTTCAGGGTAAAGCTGTCTTGGGCAGGGGAAATTTTCTGTGCTGTGTTGCAGTTCAGCTCTTCATTAGTGATCATGTTTGGTCGAAATGCCCCTAGAATCTCCAGGAGACACCTTTCTGGAAGGTCTCAATCTTACACGCTAGGCTGTTTCACTGTATTGTGGATGCTGTGTAATAGTTCAGGAACAAAGGGCTGTGGTGTTTTATCAGTGCATTGTCTCATTTCAGCTATCCGTCAAGCCATCTCAAAATCTCTAGTTGCCTACTACCAGAAGTGTGAGTATTCTTTGAATCTTCGTATTATGTCTGCCTAGGAGCCACCTGCGGTTAGAAGTTTTCAAGTGTACCAAGCTGGATGTGCAACTGGGTCTTCCAATGATGCTTTACTTGTTCATGGCTGAAAATCTTCATGCTGACTTGTCAAAACTGAGGAAACCTTTGCAGTGTCTAGACTAGCATGTACAAACGGGAAGGGAAGTCAGACATGTGTACAGGGGGCTGTCACCTACTTCGATTTTTATGTGCAAGTTATATCTAGTTAAAGCAATGCAATGTCATTGTAACAATAACACATTGCTACTGGACAGAACAAATGTAGAGTAAATTGAAAGTGACAATCTGATCCTTGGACAGTTTTGACATTCCCTTCCCTGTGTTTGACAGCATTGTTATTACCACTATTTGCTGTGACGACTCATGCACAAGTGTCTGATTGTTTCAGATGTCGACGAGGCTTCCAAGAAAGAGATCAAGGACATTCTGATTGCATACGACCGTTCCCTGCTGGTTGCTGATCCTCGTCGCTGCGAGCCAAAGAAGTTCGGTGGCCCTGGTGCCCGTGCTCGCTACCAGAAGTCATACCGATAAATCCGTTTGGACATCATGTTGGCGAACATGTGTTGTACAATAAAGATTACAAGAGAGTGATCAGGTGTTGTTTGTGGTGTGTCAGGATTATGCAGTGACCAAGGCTGATGAACCAATGTTTTTTATTCATTTGTGCCTAACGATTTTTTTCTTATATGGTGTATTTGGCTATTGTCATGACTATGTATTCGGACACCTAAAAATAATTAAATTCTCGGCTGTTCAAAAACATACAGTACAAAAACATTTTTGGTGTCCAAAAACAGTTTATATTATGGACATGTATTCAGACGCCTAGAAATAACAAGTGTTCAGAAACTCATAGTATTGAGTAGTTTTTTGGTAGATTTTTAGGGTGTACATATACGTACATTCATTACAGTGTATAACAAACATACACCAAGGTTGTAGGTCACTGACTTGCATATCCTTGGCATCCTCAAATTGTTTCAAAACTAGTAAAATTATACTTTGACTTTGTGGAGCCTGATGATGGAAGAGTAAAGGTAATGGCGAGACTGGTCGTTACTAACTTTTGAAAGTAGTGTCGATAATGCCCATTTCCCATACTTTATCAATATTGATGTACAGTAGTAGTTTAGCATTTAGAAAGTGAGAATCTTGCTGTATATGGGGTATTTTAAAAAGAATGCAGGTCGTCATATGTCCAACCCTTGGGATTATATTAATTCCTGAAAGTTTGGCACTCAAGGTTCAAGCCATCTAAGATGAAAATGTTAACAGATACATGATATGCAAGCTTGATTATAGTTGGATACTGAAGCAAGTAGTAAAAGTTAAGTTCTTTTGTAGGCAGGTATCCAATCATTGGGACTTATTGGAGAAGCATTCAGCCTTGCTGCAGTTTATACACAAATATCCAGCAGTCTGAGCTACTGTAGCAATGTAGAAATACCAAACTAGCCTAGTGTCCAGAAGTAGGTGCAGCTGTTATTACTAAGGTGGTTTGCACTAATGATTTTGAAGTTTGTAATTATTACTATACTTAGCATAACCAGAAATTGAATCGCATTTGTAATTACTGGTAAGAAAACACCTCTAACACTACAGCAGTATAAAGGAAGATGTTGCTCGCTGCACTTAGATCTGTTTACTTACAACATGAGACTACTCTCACGCTGTGGCTCCGTGACTGAAAAATACCTTGACTGATCATCTTTGTTATGTGCATAGTTATACTGCTAAACACTGACAGCCACACAAATATAACCATTAATCCATTTTTATTAACAATCCTCGACAGTTGAAGGCAGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00380	Ribosomal_S9	Ribosomal protein S9/S16	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000754	Family	Small ribosomal subunit protein uS9	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR020574	Conserved_site	Small ribosomal subunit protein uS9, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21569	RIBOSOMAL PROTEIN S9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015935	Cellular Component	small ribosomal subunit	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf10076_5.9 global RNA-seq network