Gene detail

Detailed information of PE_Scaf10029_6.1 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf10029_6.1	PROTEIN PHOSPHATASE 2C	Superscaffold7	53286743	53288889	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf10029_6.1

ATGTTTGGTCCAGGGTAAGGCAAGATAAATTTAACTAAATTTTGTAGACTTAATTGCCACGTATTTTGCAGGCGGCATCGTCATGCATCGTCGTTAAACGCAAGGTCAACGTAAAGTCGACTGTACCGCACAGTGTGCGCTAAATCGCCTGCGCGCATCAGGCTGAGGCCTGCCAGGTACGCGCTGTCGGCGCGAACAAATATGTAGGCAAAACTGACGTAGTGTGACCTAATAGGCTGACAGAAATTACGGTCGTCGCGTTTGTCTTGTGTGCCTGTAAACGGGCACGAATAACTCAGTTTTAACTTAGGAGGAAGTGCGCATCATCTTGACTGTCAGAACTGTCAGAACTCCGGCCAGTGAGTGTAGCAACGGACAGTGACACTATTATGTAAGTAAGATATCCATTATCGCCTGCGCGTTGCCACAATGAACCAGTCTGCACGGAAATAACGAATTCACGGACGTGATTTGAAAGCGGTAATCCCGACGTCGATTGCTTGGTAAACCCTGTGTCAGTGTGTGACGCTGTCATCTTTGGGCTCAGTGCCTAATCAGGCTAATGATGCTTTCCTCAGCAAACCTGTGCATCGTCCAGATACTGTTGAGTTAGTCAGTCGGAAGATAGGGTGCCAATAACATTTGATCAAGTAATGGCACTGGTCCACAGGGCTGGTCCATTGTGGAGCAGATCGCGACCAGCGCTGCTCCGGAAAGTGCTCCACCGCTACGTTCTAAGGACGATTATAACTGGCGGAAAGGGGACAAAGTTGGAGATGTTTCCACAAAAGCTGGTGCTTCCTGAAAACCATGGCTACGTTCCAACATTGTCGCCAACAGAAATTTCCTTGTTGCTGTCAGCCAACGAAGCAAGGTTCATGAATGACGGGCACTGGTCAAGTGCAGTTCAAGGATTTGAGAGTAATCAGCTTGCATCGAATTACCCCATCGAAGATCGCCGCGCTGTAGCACAGCTGACCCAGACAGATGGGGCGTTGTTTTCTGTGATTGACGGACACGGCGGCATGGCATGTGCACAGGCAGTCACTGAGCGACTGTTCAACTACGTGGCCGCACTACTGCTGCCGTATCAACTCCTGGAGGGATACAGCCACAGTCTGCGCACTGATCGGCCGATGGAACTACAGGGTTGGTACAAGTTCAACAATGCGTATCGCAGGGATCCAGTTCCGCCAGCATATCGCAACAGCCTCACAAAGTTTGTTGTTGAGTCGTTATCGTTGAGTGGCCTGGAGGACGATGTTGATTTAGTCGCCAACAGCATCAAGTCAGCCTTTGTTGGACTTGATAGTGATATCTCATCAGAAGCACTGCCCGTCGCTGGGGTGTTTGACGTCGATGCACTGGACGCTGCATTCTCTGGTGCATGTGTGTGTATGGCGCACGTATCCGGTGTTGACTTACATGTTGCTAACAGTGGGGATTCACGTGCAGTTATTGGTCAGCTAAATGACAAGGGACAATGGGTTGCAAAGCGAATGTCGGTGGACCAGAATGTTGACAATGAGGCTGAGGTGAAGAGAATGGTGAGCAGCCACCCTCCAGCTGAGGCAAGACATGTCCTGAAAAACAATCGACTGCTCGGTCAGCTCGTTCCGTTGCGAGCGTTTGGTGATGTACGGTTTAAATGGTCGCTGCAGGAACTGAAGAATCTTGTCAACCTTTTAGACACGACATATGTGCACAGCATCGTACCGACGAACTACTACACTCCGCCCTATCTCATCGCCACGCCTGACGTCATGCATCATCGCCTGACCCCGGCTGACCGGTTCTTGGTGCTGGCTACCGACGGTATCTGGGAGACGATGTCAAACAGCCGTGTCGTGCAGCTCGTGGGTGAATACATCGAGGGGAAGGAGACACACGATCACTTCAAACCAACAGATTCGGGCACAAAACTTGGTGAAATACACAACATTCTCCTGAAACGAAAATCCACGCTCGCACGCAAAGCGGACGACCATAATGTGTCGACACATTTGATTCGCCATGCACTTGGTGCTGTCCATGGGAAAGTGTCGGAGATGCTGACATTGCCGGCTGACATCGTACGCTACTACAGGGATGACATGACGATAGTAGTAGTGTACTTTGACACCGAATATATCGCTTCGCATCAGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00481	PP2C	Protein phosphatase 2C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001932	Domain	PPM-type phosphatase-like domain	Interproscan
IPR015655	Family	Protein phosphatase 2C	Interproscan
IPR036457	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13832	PROTEIN PHOSPHATASE 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004722	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0004741	Molecular Function	[pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf10029_6.1 global RNA-seq network