Detailed information of OS493_040279-T1 in Lophelia pertusa Gene info
Gene IDAnnotationScaffoldStartEndStrand
OS493_040279-T1PRE-MRNA SPLICING FACTOR PRP8scaffold_198129877701-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12134PRP8_domainIVPRP8 domain IV coreDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR021983DomainPRP8 domain IV coreInterproscan
IPR027652FamilyPre-mRNA-processing-splicing factor 8Interproscan
IPR043172Homologous_superfamilyPrp8 RNase domain IV, palm regionInterproscan
IPR043173Homologous_superfamilyPrp8 RNase domain IV, fingers regionInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11140PRE-MRNA SPLICING FACTOR PRP8Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000244Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0030619Molecular FunctionU1 snRNA bindingInterproscan
GO:0030620Molecular FunctionU2 snRNA bindingInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097157Molecular Functionpre-mRNA intronic bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

Expression pattern
 1. Expression trend for OS493_040279-T1 global RNA-seq network
TOP