Gene detail

Detailed information of OS493_038339-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_038339-T1	DYNEIN HEAVY CHAIN FAMILY PROTEIN	scaffold_560	34269	46134	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_038339-T1

ATGGCTCAAAACGGTGCAAGCACTTTGGCGAACGGGAATAGAAAACCGGCAAACAACGCAAGATCCGATGCGTTTTCTTTGCCGGGGATTGACGAAAACGAGCTCCGTGCACGTATTTATGCAAAGCCTCAATTGAAACCAAATCCAAGGGCTCTTAGATTCAGTGGCCCGACTCCTGTGCAGCTCAAAAAGAATATACCAACAGCACCTCGGCTAGAGCCCTTGCCAAACCTTGCCAGATATCAAGAAAAGCAAAGAAGTCTTCCTTACACATCTTCTGCTGGCAAGACAAAATCACCAACACCGCCTCCGTCTTCTGAGCCAGAGAAGAAAAAGACACGTCGAAGAGATGTTGTGGAGCCTCTTGAACGGACAACATCTCCATTACCAAACCTGCCTGAAGACTTGAAAAACAAACAAGAGAAAATTGATTCTGTTGCTCAGGGTAATGCTAAGCGACAGACTTCGCCAAAACAGAGAATCAGTCATGAGGCTATTCTGAATGGAAGTGTTGCGGTGGGGAAGACAGATGTTATACCTGAGGGTTTAAGAGACCCACTTCAGATCATCGGCTTGATCAAGGAGAATTCCAAACTGGGGTTTCTTTATATGACGCCGGCTGTGGATCGGTCATCCATTCAATACAATCCTTACAACCTCAAGATTGTTAAGCATTCAGAAATCAACCATTCAGATTACTACACAATAAGTACTGAGGGAGTAACACACATACGCGACAATGAAGCAGAGTTTACTGCTCTTGAACGCTGGGAGAAAGAATACAAGGACTACAAAAGACTCGTCACAATTCCAACATTTGCTAACTTCAGGATGTGGAAGGCGTTTGTTGTGTGGAGAAAGAATGTTAAGACAAAGAAGGTGACTCAGTGTAAAAACCAGCTGCAGGAAAATCTCTTCATTGTAAATGCATCATTACGCCCAGCCCTGTTGAATGTACGTGAGATGTGTTACCGCATCAGTGACATGGGACTGTGCAGAGTGGAGAAAGGACATACGTACACTTTGGATGAGTTCCGCAATGCTCAGTTTGAACAGCTTGAAGAAGTTGCTGGAAGACTGGCAGAGTTCCGTGATCTTGTAAAGGAAGTTGTAAGAATTGCTTGTCGAACAGCATTACTGGAGGCGGGGTTCACCCCTGATGATTATTTTATGGATATGGACAGTCCTATGGGCATGTATGCAGATGAATATGGCGGTCCGGCACAGTCGATGTCATCTTATTTAATGCCAAGTGGATATGAGATGGATATGTACGGTGATGCACCAGACAAGATGACGTATACTGAACAGGCCAATAAGAGAAGTCATTGTAAAAGACTCACAAGCTTTATCCGGCTTGCTGACTACTTGATAGTAAACACCATGCATGTCCTCGCGGCAAACTCTGTAGCTACTCTACTCAACTATCTAGAGGAACAACTGCAGCACACACCCACCCCCTCACAAATCCAAGGAACAAGTGAGGAAGTGGAGGCCGGAGAAGAAAAACCTGAAGGGGAGGGTGTGGAGCAAAAGGATGAGCAAGGTGAACTTCATCCACTGTACACCACAGAGCTGCTTCTAGAGCCTCAAGCGCTGCTGTTTTTCCCCGGATTAGATGACTTTCAGGATGGGCTCGGAGAAGTTATTAAAAAATTTCAAGATGCTGTACTCAGTGTTCAAAACTTGGTGCCTGATCCGTACTTTGACGCCTTCACTCAGCCATTCATCAACGGTAAAGTTGAGGAGAAAACTGCTGGTGACGGACCAAGTTTGGCCACCATGTTTGAAGATGACAGGCATCTTCAGGGAATTATACAGAGTATCAAGGATGCGATCTCATCAGCATTTGACTCTGCCTGGCAGTATGCCAATACCTTTGAACCTTATCGCCAGTTCTACCAAGAGAACGAGAGCTTGGATCTGGAAACCATCAGACAGGATGAACATGATGTTGGATTCTTCTCTGAGTCACTGGACAAATACAACAGTGAACATGAACAAGCGGTTGGCATCTTGGAGCGCAGACCAATTGGTATGATCCTTGTTGACTGCAAGAAACTAAAGGAAGTTCTTATTCCATCGCCACTAAAATGTTTGGAGGTTATAAATGACATTCTACCCAAGCTAGCCAAGAAGAGAACAGATAAACTGATGGAATTCTGTCAAGATGCCCAGTTTAAACTGGAAGCCATTCCCAGCAGTACAGTGGAGTATGTTGAAAACCTCACATTCCTTGACACCATTCAAGAGAAGGTGGATGACATTGAAAGAGATGCTACTGTTGTCAAAGAGCTGTATGACTTGATTGAAACATACAAAGTACCAACACCACCTGAAGATCTTGCTGTGTATCAGACTCTAAGACCAACTGTGACAGCTGTTCGTAATGTGATTGACAAGTCGCTAGCTGAGAGGGATGCCAATATTGACAAGATGTGTACACATATTGACAAGGATATTGTTTCACTGGGCAAGGAGGTTAAAGAAGTCAAACAAAAAGCACAGGACCCCAAGATCTTGGACTCCAGTTCGCAGTCGGAAGACATTATTCAATACCTTGGAGCTCTTCTTGAGAAAATGGAAAACCTTAATAAACTGGGCTTTACCTTCAAGTCATACCAGAAGAACTTTAAGGTTGAGGTGGCTAAGTTTGAAGAGCTTGAAGAAGTTCATGCTGAGCTGAAGCTGAAGCAAGCACTGTGGAACTCACTTGTGGAGTGGGATGTCGTCAATGATGAGTGGCTTGAGACTGCTTTTGAAGAGCTTAACCCAGAAACGCTGAGTAATCAAGTGTTGAAGTATGCTAAGACAGTTATGCAGTTGGAGAAAGGTCTGCCACCAAACTCAGTGGTACCAATACTGAAAGATAAAGTGGAAGGGATGCGGCATAAGTTGCCAATCATAACAAACCTGCGTAACCCAGCGCTGAAGCCTCGTCACTGGGAGCATATTCAGCAGATATTTGGCTACCACTTCACAGAAGAGGAGCCTCTTACTCTGGGACTACTGAACAAGATTGATGCATTTGATCACACAGAAGCTATTGAAGAAGTGTCAGGGCAGGCATCGAGTGAGGCATCGCTTGAAGGAATCCTCAAAAGGTCTGCTTCATAA

Transcript

OS493_038339-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08393	DHC_N2	Dynein heavy chain, N-terminal region 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013602	Domain	Dynein heavy chain, linker	Interproscan
IPR026983	Family	Dynein heavy chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10676	DYNEIN HEAVY CHAIN FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0008569	Molecular Function	minus-end-directed microtubule motor activity	Interproscan
GO:0030286	Cellular Component	dynein complex	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0060294	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0097729	Cellular Component	9+2 motile cilium	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_038339-T1 global RNA-seq network