Gene detail

Detailed information of OS493_038111-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_038111-T1	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	scaffold_509	75729	86325	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_038111-T1

ATGGTTTTGAACTTGTTTGGGTCGGCTGGAGTGGGAAAGACTACGCTTGCAAACAAAGTTTGCTCAAAATGGCGAGGAAAGCATTTCGTTTTTGATCTAAGAGAGGCTAAAGATATGAGGGCGATTTATCTCAACATTATGAATTCTCTTGAACTATCTGTTCCCATCGGTTATGTTGATCTGAACTATGTTGTGACAAGAATTCACGAGAAGATTCAACCGTTGAAAAGTGAAAAGCAGTCCGTTCTCTTTTTGCTCGATAATGTCGAGCAGTTCACTGCGGGGCAGGGAAAGGAAGGCAAGAACTTGAAAGCAGCTTTTGTGCAGTTTTTAGGAAGGCTTTCAGAATTTGATTGCAAAGACAAGAAAACAGCATTAAAACTAATGTTGACATCCAGGACTCAATTGCAGGATACCAAAAAGGTGGACAACTTTGAGGTGAAGTCTCTTGAAAGTTCCTCTTCAGAGAAAATCCTACTTTCCAAGGGAATAACCAATGTTAATACACACCAGAAGGATAAACTACTTGGCATCTCAAAAGGAATACCACTTCTTTTGAAAGGATTAGCTGCTATTTTGCGACAAGAAAGAAAATCTCCTGATGATCTTATTACTGGAGTTCACAAAGGGCAAGCTGTTGCTTCAAAGAAATCGAAATCGGAAGAGGATGCTAAAGAAAAAACTTTTGATTTTCAAGAAGAAGGAGTGGATATCGGTCAGCTGTCAGCAATTAGAGAAATGTTTGATACACTTCCCACTGATCGATTGAAAATGTCTGCCGTGTCAATTTCTTTGTTCTGTGGTCCCTTCTCTGTGTCTACAGCAGCTAAAGTTCTCAGCATCAGTCAATCAGAGGCTCTAGCTCAGCTGGAGGGGCTGGTAACCGGTGCGATCATTTTTGTAGTTAACGAAGAAGCCAAAGAGAGGATGTATGACATTCATCCTCTTTTAAGAAAGTATGCTGACAGTATCAAGGATGATGCAAAGTTCCTGAGAGATTACATGGAAGCAAAGGGGCGATTTCATGAGCACTTTATGTCAAATATGGAGGAAATTGCCAAACATTTAGATTCTGACTATGTTAGAGCTTTCCACCTGTTTGAGACTGACAGAGCAAACCATGAGTTTACTGTTGATATCTCCTTGCAGCCAGAGTATTTCAGTGTTCCAGGTGAATTCCGTGAGAGCGCCGCGATTGCATCACTTTTCAGTGCTATGCTGTCTGGAGAAAAACAGATCAACCTGTTTCATTCCTGGGCTGAGATGTGTCAAGATGATGGAAAATCAGGTTCTCTCGGTCGAGCTCAGTTAAAATGCTGGGAAGCTCGGCAGATTTTAAATGTTGAGGGAACTGTGAAGGCATTTGAAGTATTGAAGGAAGCTTCCTGTTCATTAGAAAAAGTTCAAAACAAATCTAGTGAATCTTACAGGCTCAGCAAAGGACTTTACTTGTATTCTGAGGGGGAAGCTTATTGCAAAAACAGAGATTACAAGAAATCGCTGGAAAGCTTGGAGTTATCTTTAAAATTCACGGAGGAGCTGCTAAACGCTCATACGGAACTTGCAAGGTGCTACAATGCTATTGGGAACTGCCATTTCAGTCTCAACAAACCGACGAAAGCACTTGAGTTCTACAATAAAGCGTACCAGATGCAATTGGCATTGGCCGGGGAGTATCACTCTGACATGCCAATGTACAAGAATCAGTTTGGTACAGTGCACGAGAACCAGGGGGAGTATGGCGAAGCTGTTGAATGTTACAAAGAGGCGCTGAGACTTTTAGATGAACTCAAACTTTCAGGGTTTTGGGATGACGCACACTTCTGTCGAAATCTTGCCAATGCTCTCATGCTTCAAAAGAAGTACTCAGAAGCAGTTGACCCAGCAGACAGGGCTTACAACATAAGGATGAAGATTCTTGGGAATCACCCACTAACTGTTCGCAGCATTTTCCAGCGAGCGGTGATTCAGGCCAACTTAAAAGAATCAAAGATAGCCTTAAAGTTGTTCCGTGAAGCATGGGAAATGGAGAAGTCACTTGGTGCAGGAAACCATAGTGAGGTGTGGCGAAAGATTATTAAAGGTGTCGAGGAGATGATGAATGACAGAAGAAAGAAGGACCAATTTAGGAAAGATGCTGTAAAGTTTTGTCAGCGTTTCTGGGACGAAGAGAAACGTTCTGCGCAGTTTAGCTTCACCCAGTACAACAAAGACATAATTGATGCCATAATGCACCTACTTGGTGACAAGAGAGACAGGTACATGTATGAAACAGAGGAAGCTCTTTGGTTTTATGAGGGGTTTCAGAGTGCTACTAAGGAGAAGTTTGAAGATGAGTTTTACCAGGAAACTGACAATAGTGCGCTTAATATGATGTTGAAAGAAAGAGATGAGATCTTGGACAAGCTAATCGAGCTTTGTCATCAACTTGGTGAGCATGCAAAACTTACAAAGTACCAAAACGACAAGTTGGCACTGTACAAAAGAGTCCTTGTGAGAAAAGACTTTGTTGGTGAGAATTATGAATACGACAAAGCAACACTGAAAAGCAAGGTGGAAGAGCTGTACCAAGATGTAGGACAGACAAAAGATATTCCAGAGTTCCAAGAGAACCTGTTACGTACTTGGCAAATGCAGTGGGAAGAAGGAAAAGGTGGAGAAAAGATGAAGGAGGTTGGTGTGGGCAGAGAAAGAACAATCAATGGGCTCTTGCAGTTGTGCATGGAGACAAAGAAAGTGGAAATGCTCAGAAGATATAGAAAAGAAGCACTGAGCTTCTACGAGGAAGTTTGGGAAGTGAAGTAG

Transcript

OS493_038111-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_038111-T1 global RNA-seq network