Gene detail

Detailed information of OS493_038030-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_038030-T1	HOOK PROTEINS	scaffold_494	57148	73504	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_038030-T1

ATGGCGACTGCAGTAGGATTTCTTCAAAGTCCGCTCGTCGTTTGGGCTAATAATACTTTCAAGGCAAGTGCACTGATAGAGTCCATAACTGACTTAGCTGATGGCGTATTTCTCAACGAAATTATGATGGACATCGATCCAACTTATTTCACGTTGACGCGTATTCATCAAAATGTTTACGGAGATGTGAATTTGCGGATGCAGAATTTGGACACACTTGTCAAACACTTGAAAAGATATTACCAGGATAAACTTCAACAGCTTGTTTTATTAAGAATTCCAGATGTTGTTACGATAGCTCGAGAACCACAAAGTGATGAAGCAGCAGAAGAACTGAACAAAATCCTTTTGTTAATGTTGGGTTGTGCAGTCCAGTGTGATAATAAGGAGCATTTCATTGAAAGAATAAAGGAAATGGACCTTGAAGTTCAAAAATCATTAGTGGAATATATTCAACAGATCACTGACAACACAGACAATGTACTTACCTTCCGAGCTCATGACTTGTCTGAATACCCTGCAGACCAGCTGTTGCTTTATGCAGAAAATATGTTTTACCACATCACCCAGCTTTCCGAGGATAGAGACAACTGTGTTGGAATGGTGTCACATTTGTCGTATGAAAGAGATGCATTACTTCGTGATAGTGAGAGCAAGAATCGCGGTGCGTTTTCACCTCCACCAAGCCCAGCTGTCCGCCACAATAAAGAGTTACCATCTACACATGCTAATAAGGAGAAGATCAGACTCCTGACAGAAGAAATAGAGGAAAAGAATGTTGCCCTCTCAGAACTGCGAGATGAACTGATTGCCAGCAAAAAGAGTCTGGAAACACTCAGGCAGGAGAATAAAAGTTTGTCTCAAGATGCTCGATGGGTTAAAGCTTACAGAGACGAGATTGATGCCTTGAAGTCGAAGACGGATAAAGTTGATAGGCTCGAGGCTGATAACCACAGATTTAAAGAAAAACTGCGGGATTTGGATTACTACAAGAAGAGAGCAGAGGAACTGAAAGAACAGAATGAACTGTTATATGAAACAAGAGTTGTACTGGAAGAACAACTAACAGGACTCAACTCTAAGGAAGAAAGAATTGAAATCTTGGAGGAAGAAAATAAAAAACTGAAGTCCCACATTCATCATCTAGCAGAGGAAAGACAGTTTGACCAACTCAAGCTCAAGGAAGTAATGGAGGAAAATGCTCAATTGATCGTCGACAAGCAGAACAGTATGGCTGAAGCGGCCTCATTAACATCAGAACTTGACGCACTACGAGGAAAGAAGTCTCCAGGATCTACAACTTTTGCAAGTGAATATAGCGAATCCAGCTCGATAGAAGTGCTTCGAATGCAGAGGGAAAACCAACAGCTACGGAAAACGATTGACGAGCTCAAACACTCTGGACAAAGGATCATCGAATTGCGAGCTGAAAATGAACAGCTGCAGAATGCGACCTTGGACGGAAAAACAACCGTGTTCAACCTAAACGAGGAACTTGCCAGATTGAAAGCACGGGGCCTGCAACAAGAGAACGACTTGAACAAACTGCGCTCCATCGCGAAACGACAGCAAGAAGAGTTGAAAACGTCTGTAGACAATGTGCTGAACTTATCTGGGGAGCTGAGAGAGAAAGATGTAGAAATGTCACAAGTTGAAGAACAAAGTTTACTTAATTTCCAACTTTCAGAGGAAAAAGTCCAGGATCTTGTGAGCATGGCTGATGAGCTCAAAGAAAAGGAGGCTAAAATTACACAGTTAAACCAAGAAGCTGAGCAGAAACAGGAAAAAATAACAGAACTCAGCCGGCTGGCGGAGGAGAGAGAATCAAACGTGATGGAACTGTATGAACGAGTGAAAGAAAACGAACTGGAAATAACAAAGCTCGCAGAACAATCTGAGAATAAGAACGAGAGGATCACAGAGTTGACCAAGTTGACACAGTTAAAAGAGGAGAAACTTGCCGACTTGAACTTGGAATTGCGAGAGCGAAAGAAGGAGATTTCTGAGTTGCAGGATTTGTTGAAGGAAAAGGAAGACGTCGTTGCGAAGATAAGTCAAAAGATCAAAGTCAGAGAAGAGACTATTGCGGAGTTAAAAGAGAGCATCGAGGCAAAGATAGAAGGCTGCAGAGCCTGGAGAAAAGGTAAGTCGGTGCCATGTGGACTGAGGAAACGTTTCAAAGACGCGTGGAAGATGCGGTGGCCTAGTGGTTAG

Transcript

OS493_038030-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19047	HOOK_N	HOOK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR043936	Domain	HOOK, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18947	HOOK PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030705	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_038030-T1 global RNA-seq network