Detailed information of OS493_036196-T1 in Lophelia pertusa Gene info
Gene IDAnnotationScaffoldStartEndStrand
OS493_036196-T1CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBERscaffold_35285669100047-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07521RMMBLZn-dependent metallo-hydrolase RNA specificity domainMotifInterproscan
PF10996Beta-CaspBeta-Casp domainDomainInterproscan
PF16661Lactamase_B_6Metallo-beta-lactamase superfamily domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001279DomainMetallo-beta-lactamaseInterproscan
IPR011108DomainZn-dependent metallo-hydrolase, RNA specificity domainInterproscan
IPR022712DomainBeta-Casp domainInterproscan
IPR036866Homologous_superfamilyRibonuclease Z/Hydroxyacylglutathione hydrolase-likeInterproscan
IPR050698FamilyRNA Processing Metallo-Beta-Lactamase Domain-Containing ProteinInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11203CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004521Molecular FunctionRNA endonuclease activityInterproscan
GO:0004534Molecular Function5'-3' RNA exonuclease activityInterproscan
GO:0005847Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0006378Biological Processobsolete mRNA polyadenylationInterproscan
GO:0006398Biological ProcessmRNA 3'-end processing by stem-loop binding and cleavageInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

Expression pattern
 1. Expression trend for OS493_036196-T1 global RNA-seq network
TOP