Gene detail

Detailed information of OS493_035869-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_035869-T1	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	scaffold_337	283044	296912	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_035869-T1

ATGGCTTCACAATTTGTATCCAAGAAATATCAACAGACCACCTGGAAGCTGAGGCGAAGAATAAACACAAAGCTACTAAGGCAGGGAAGGAAAACCTTATCTGCAGATATGGCCGTCAACTGTGGTTTTCTGTTGCTGGTTTGGTTTCTCTGTAGCGGCTTTGCTGTTTCAAGAGCACAAGATGAGCGCTGTGAAAAAGGATGGCGCCTTTATGGTGGAAACTGTTACTTCCGAGAAAACAAGAAGAGAGAAACTTGGCAAGGGGCCCAAGACGTCTGTGCAAAACAACAAGCCAATTTGGTAACGGTGAATGATGCAGATGAGCAGAAGTTTGTCGCTGGTATTGTGGGGAATAGAGGGAGCTGGTGCGGCTTGAATAACCAAGACAACAAGAACGAGTTCAAGTGGGTCAGCGGTGAACAGAGTGGCTATACCTTCTGGGCCCCAAAAGAACCTAGTAAAAGCAACAAGAAGCGCTGCGCTCATATTCTGTCTACTAAAGAAGGCGGCAACAAATGGGAAATGTCCAAGTGTACAAATAAATTCAGATTCGCTTGCGAGAAAGGTGCGGGACCTTTACAGCCGTGTGCTAGTAAGCCGTGTAAAAATGGAGGCACATGCAGTCAACAAGGTCAAGGATATAAGTGTCAGTGTACAGATAAGTTTACAGGGGACAAGTGTGAAACAGAAATAGTTGCCGATCCTTGTGATCCCAATCCTTGTTTGAATGGAGGAAAGTGCACTGCTAACAACAAGGGCTACCTCTGTCAGTGTCCAGACAAGTTTACTGGTGACCGCTGTGAACAGGCTTTGGATCATTGCATCATAAACCCTTGCCAGAATGGAGGAACATGTCACGACTTGGGAAACATGCAGTTCTACTGTCAGTGCGAGAGGGGATTTACTGGAACAAACTGCGAGAAAGTGAACTGTAAAGCACTGCCATGCAAGAATGGAGGAACGTGTTTGGATATAGACGACAGATCATTCTGCAAGTGCATCTCTGGTTTTACTGGAGCTACATGTCAAGGCGAGATACCGTCCATCACCAAGGATCCTCAAGACACGATTCGTCTGGAAGGCGATGACGTCACACTTTGCTGCGAGGCTAAAGGAACACCTACCCCCGAATATAAATGGTTTCGAAACGGCGTTCCGTTGGCGGAGTCAACCAGCAGGCTACGTCTTTCAAGTTTATCTTCAGGTGACGCTGGTTTATACAGATGTCGCGCAACAAATGAATTTGGAACGATATTATCCAGCGAAGCACAGCTGACAGTGGTTGCTGGTAGCGGCGACGATTCATGCGACTCCACCCCCGTGAAAAAGGTTGTCACTTTTCCTCCCGGATGTAAGGAAGATAGCAGTGGAAGTAGCAGCGTCGATGTTGGAACTTGTTCTTATGCAGCATGCGTTAAACGCAACCAAGGTGACGCTGCAAGCTGTGGAGGACAACAATCGACTCAACAGTGTTGCAACCCTGCCTCCATGTCCGACATCCCTGTGACTTGTGGTAATGGTAAAAAGTTCAACATTGAGAAAGTCACCAGCTGCGCCTGCACAGAGTGTGCTGTGCCGTCTATGGTCGTTCGTGGGAAAGTAGTTGACCCTGATGGAAATCCGGTGAAGAAAGGCGAGATAACTGTGGGAGACGGAGAGAAAAGGTACTCCACGGACTTAAAAGGAAATTTCAAATTTCCCGTCAAGTCCGGAACCAAGAGACTGGTGCTGACCGTAAAAGACAAACTCCAAGGACTGTTGGAGGACACGACAAAACCCTTCACACTTCACGAGGGTCAAGTGTCATTCTACACCATCGTGCTCCAAAAGAAGGCGCCTGCAATCAAATTCCAAGCTAGCCAGGAGCAGAACTTCCCTCTTGGTGGGTCCGGTGGCAAACCCAGTTTCGTCGATCTCGATATTCCTGCAAATGCCTTCCTTACAACTGCTGGAAAAATATACGATGGTGAGATCACAGCAAACATCGGAGTAATTGATCCTAGAAGCCAAGCAGACATGGTAGCAGCTCCGGGTGACTTTTCAGCGATAGACGACAACGGGGAGGAAGTGATGCTTGGCACTGCGGGAATACTGAGGCAGGCTTTCACTGACGCTAACGGCAATCGACTCAGCCTGGGCAAAAACATTACCGTCCGCATAGACGCTGAGCAGCTGAATATACCCGATGGGGTTACAGTTTTCCAGTGGTACCTGAGCAAGCAAACAGGTCGCTGGGTGAAGTTTGGAGTACTGCGTCCTGAAGAAGGTGGCTCGAGGCGTAAAAGGCAAGCAAGGAAGTTCTTTGTGAGTGAAATTACGCCGGACGTCCCCCCGGACAACATCAACTGGGATTACGTCGCTACTACGAGCTATGTCCGAGTCAGGGCACCTCCAGGCACAGTGGTGACTCGCATTGCGTTGAGTGACAATGGCCAACAGTATACCTCCTATCGCCAAGAAACCGTCCCGGCTAGCGGAATCCTGTGCATTCTGACTCCACGAGACAAGCCAGCGATCCTACAAGCGGAACTTGATGGAGCGCCCCTGTTGCCACAGCAGCCCATAAACTTTCCTTCAGCTGTGAACCCTCAGATTATCGATGGATCGTCCGTCGGGAACATTTTCAAGATCCAGTCGTTCAATTTCATGTCCACTAAAGCTGATGACAGAGGCCCGGTGTACCTCAAAGGCGAGCAAGGCAGATGTGGAACAAAACAAGCAAACGACTTGGCATTTGAATTCCAAGAGGCCAACGCTGGTCAATTATTCCACTGGGAAACTCCTCGAATTCAAGATCCTAACGATCCTGGCTTCTGGGACGCAAGGCCAGATGAGATTTGCTTCGTCAAAGCGCTTGTTACAGGATCGAAGCCCGACTCAGTCATATATGTTAAAAGCACCGGAAAAGCTCAGGGTAGTCCAGATGTGGATTACGGTTACACCGCGGAGAAGAGTGCCATGGTTGGCGCACAGGGCGTGGTGTGCTTGGAGTACCGGTGCAACGAAGGTCCGCAAGCGCCGTACCAGACCCACCTACAATTCCTTACACTGACCGGGACATGCACATTCCAGGGGACCAACACCGTCCAGGGGCTCAATGGTGTTTTAGACGGGCAACAAAGCCAGTGTGGTGTGTCGCCAGGCAGTTCCTCCAGTAGCGAGCGAAACTTCTGTGTGCCAAGTGACTTGGTGGGAGGAGACGCTGGACTGTACACGGGTGATACAGGTGTGGCCAAGAACAGGTGCCTCACTGGAAACAACCAGTACAATTCAGGACGACCCATTGCCACAGATGTAAACCCTACCGTGAAACTGAACTGCAACTAA

Transcript

OS493_035869-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR008969	Homologous_superfamily	Carboxypeptidase-like, regulatory domain superfamily	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR039675	Family	Cartilage intermediate layer protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15031	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_035869-T1 global RNA-seq network