Gene detail

Detailed information of OS493_035303-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_035303-T1	RIBOSOME BIOGENESIS PROTEIN	scaffold_317	133516	141293	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_035303-T1

ATGAGAAAGAACGACTCATGTACGCTCCTCTGTCTGGAGTTGGAGGAGTGGTATATGACAAGGATGCTGTATACATTGATCTTGGTGGAAAGTCACGCTGCAAGAGGAAAATCCAACTCATCAGTTCAGGTTGACAGTCGACCAGGAAATGAACTAGTGTCATCTTTAATTGACACAAAGCAGACGATTGACACCAAAATGATGACAAGTCATCTGACATTATTTAAGGATGGTGCAAGCATAGCCCCTGATGAAGTTGTTGAGGACAACGACTATACAAAACCTTTTGAGGAAGTTGTTATAGATGAGAATGGTCGTACAAGAAGGAAAGCTGTGTTTGGTGACGATGATGATGTGGATCAGGATGACGACGAAGATGAGGTTTCAGATGATGATGATGGTGATGATGACAATATTGATAATTTTAATGATGATGATGATGACGACGATGATGATAGCAGTGATGCCGTTGATGAAAGTGGCAGTGATGATGATGACGAGGAGGAGGAGGATAATGATGAAATAGTATTTAACTTCAAATCTCAGAATAATTCCAGAAAAGCACTGTCTGAGGAAAAATCATTGCAGAAACAAACTGTACCGGCAGAAAGAACTAAGAAACATGTCAGTAATGGATCAGAGGAAAATTCAGAACAAGAGGAAAATGAAGGAAATAATGAAATGCAATCTGAAGAAGAGGACAATGTAACTAGTAATGAGAATTCAGTTTCAGAATCAGATTCAGAAGTTGAATTTCCTGCAGTAAAAAGAAGAAAGAAAGATGATTTGAAGGAACAAAGGAATAGTGAGCAAAAGGTTACAAAGAAGTCTAAAAAGGAAACAACATGCTCCTCAGAACACAAGTTGGTAGAAGGTGTTTCACAAAGAAGGAAGAAAGGTGCCAAATCAAAGAAAACAGACAAAATGGAAATTAAAAGAACTGATGATAACTCTACAGAAGAATCCAGTTTTATCGATTCCAATGCTCATTCAAGAAGAAATAATGAAATTTTAAATGAAAAGGAAAGTCAAGACAGTGACGAAAATGTTGACATGGAAAGCCTGAGTGATTCAGATGAAAGAACACTTGAAGATTCACGTCTTGATCTGGAAGAAGAAGAACAAGAAGAAGAAGAAGAAGGTACTTTAAAGTGGAAAGAAAATCTGGCACAAAAAGCTGCGGCAGCTTTTCTCCAGCGCCAGCAAGACACTACAAATCTACAGAAGCTTGTCTATGGAAATGTTCTTCGTAAAAGCAAGAAGGAACAGAATGCAGAGGATGACAGTGATGACGACACTGTTGGTGGAATATTTAAACTGAAGGCCAAGAGAGATTCCGCTCAAAGCACTGACACTGCACACGAGAGAGACTGCTCACTAGAGGTGGTCAGTACACCCGTGAGGGACTGGAGCCAAGCGGAAGTGCTTCAGAGCATCCGGGATTGTTTTGTGACTGGCAAGTGGAAAGATTCTGAAGATGCCGAGATACTTCTCCAGGACGATGATCAAATGTCAGATGAAGACATGTTTGGAGACTTTGAGGATCTAGAAACTGGTGAAGTACACAAGGCTGACGAAAGCGGCCACTCAGAGGGGGAGGGAGAGGGAAACGACGAAAATGAAGAGAAGAAGATTGAAGGAGACGAGACGAGACTGGAGAAGAAAAAGAAACAGAAAGCGGCTTTTAATTCAGTATACGATGAAGGAGATGAAAGCTCGTATTATGATGAACTGAAAGCACAGATGACAGAGCAAGCGCAGCTGAATCAATCGGAGTTCCAAGACATGGATGATGAGACTCGTGCACAGTATGAAGGATTCAGAGCAGGAATGTATGTCAGGGTGGAGTTGACTGAAATGCCGTGTGAGTTTGTTACAAACTTTGATGCCAAATATCCCGTCATCCTCGGCGGTCTTCTGTCCAGTGAAGATACCATGGGATTTATTCAGGTTCGCTTTAAAAAGCATCGCTGGCACAGGCGTATACTCAAGACGCGGGATCCGCTGATCATGTCTGTTGGCTGGCGCAGATTCCAGACGCTCCCTATGTACTCGGTCCAGGACCACAACGGCCGTCATCGGCTGCTGAAGTACACGCCAGAACACTTGCATTGTATGGCTACCTTATTTGGTCCAATAGCGCCTCCAGGTACTGGTGTTCTCGCTATTCAGAGCACAGCAGGCAAACATGTGGGATTTCCGTATTTCAGCCACTGGCACTGTGTTGGACTTAGATAA

Transcript

OS493_035303-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04950	RIBIOP_C	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007034	Domain	Ribosome biogenesis protein BMS1/TSR1, C-terminal	Interproscan
IPR039761	Family	Ribosome biogenesis protein Bms1/Tsr1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12858	RIBOSOME BIOGENESIS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000479	Biological Process	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0030686	Cellular Component	90S preribosome	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_035303-T1 global RNA-seq network