Gene detail

Detailed information of OS493_034179-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_034179-T1	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	scaffold_283	461815	471250	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_034179-T1

ATGTCTTATGTTCGTATTTTTGGTGGAACAGCCGCTGTTAGTTGTGGGCTTTATGCATATTACAGATTCCACGACAGCAGCGGAAAACAGAATCCCCTTTTATCAGTGACTGCTGCAGAAAAGCCAGCTGTAGAGCAACCAAATGTCCCTTTACCTTCACGATCTGTCCACATCAACTATTTGAAGAACACGCCCGAGTTTGATGTTTTGGTGATAGGGGGTGGTGCTACAGGATGTGGAGTGGCCCTTGATGCCGTCACAAGAGGTCTGAGTACAGCTTTGGTGGAAAGAGATGACTTTTCCTCTGGTACCAGTAGTCGTAGCACCAAATTGATTCATGGCGGGGTGCGGTATCTGCAGAAAGCCATTATGAAGTTGGATAGAGAACAGTATCGCCTTGTAAAGGAAGCATTACACGAGAGAGCTAACCTGTTGGCAATCGCTCCACACTTGTCTGCGCCATTACCAATCATGCTACCAGTGTACAGATGGTGGCAGCTGCCCTACTTCTGGGCAGGAATCAAAATGTACGACCTGGTGTCCGGCCGACAGCTTCTCAAGAGTAGCTATGTTGTTGGAAAGAAGAAAGCCTTGGAACTTTTTCCTATGCTTAAAAAGGAGAAATTATGTGGTGCAATTATTTATTATGATGGTCAACACAATGATGCAAGAATGAACCTAGCTATTGCCCTGACAGCTGTTAGACATGGAGCATCTGTTGCCAATCACATGGAAGTCTTGTCTCTTCTCAAGAAGAAAGAGGATGGCAAGGAGGATGAAGTAGTCTGCGGAGCTCATGTGCGTGATGTGCTAACTGGTGAAGAATTTGACATAAAAGCCAAGTGTGTTGTAAATGCCACTGGTCCATTCACTGACGGAGTGCGTAAAATGGATGACCCAATGGAAACCAATATCTGTCAGCCAAGCGCAGGGGTACATATTGTTCTGCCAGACTACTACAGTCCAACACACATGGGGCTTCTGGATCCCGCTACAAGTGATGGACGTGTCATTTTCTTCCTTCCATGGGAGGGAAAGACGATCGCTGGTACGACCGATTCCCCAACAGAACTATCATCTAACCCTGCACCAAAAGAAGCAGAGATTCAATTTATCCTAAGTGAGATCAAACATTACCTCAGCGCAGACGTGGATGTTCGCCGGGGTGATGTTCTAGCGGCCTGGAGCGGAATCCGACCCTTGGTTATAGACCCCAACTCCAAAAGCACAGCCTCGATCGCGCGCAACCATCTGATTCTAGTCAGCAAGAGTGGACTGGTGACGATCGCTGGTGGCAAATGGACAACATACCGATCTATGGCAATAGACACAATGGATGCTGCTATCAAGGCTTGCGGGCTCAAGCCGGCGAGGGAGTGCCAGACGGACGGGCTTTTGCTCGAGGGAGGGGAGGGTTACTCGCCTAATGACTTCATCCGACTTGTGCAGGATTTTGGTCTTGAAGTTGAGGTTGCTAAACACCTCTCTCATACATACGGGAACAAAGCGCCGGAAGTGGCCAAGCTAGCCAATATAACCGGAAGTCGTTGGCCAGTCGTGGGGAAACGACTTGTAGAACAGTTTCCGTACATTGAAGCGGAAATACAGTACGCCACGAAAGAATACTCGTGTACGATCGTAGATTTCCTCGCCAGAAGAACGCGTCTTGCGTTCTTAAATGCACAGGCTGCAGCGGACGCAATTCCGAAGATTGCCGATGTCATGGCGAAGGAACTGAAGTGGTCCAAAGCCAAGAAAGAGGCTGAAATAGCTCAAGCGCAAACGTTTCTTGGGGCCATGGGATTGGATGTTCAAGATCACGTGCGCCGCGTGGAGGTCAATTTCAAGGAAGACGAGATCACAGAATACGAGAAAAAATTCCAACAAGTCAATAAATCCAAGAAAGGGTGTGTCAGCTCGCTGGACTTGAGAAACATGTTGAAAGAAATGGGAGAGGAGGTGTCAGATGAGCAACTTCATGAAGTGATTGCTGAGGTTGATACAAACAGGAATTCTTGCGTTGAACTGGATGAGTTTTTGCAGGTGATGAGTGCTCTTAAGACAGGAGCCATTGCCAACAATCGATTTGCTGTCATCATTGATCGTCATCACAAACACTTGACTCAAGACATTCCTGTGGATAGGAGTGGTGGCGGGCTGTGA

Transcript

OS493_034179-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01266	DAO	FAD dependent oxidoreductase	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF16901	DAO_C	C-terminal domain of alpha-glycerophosphate oxidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000447	Family	FAD-dependent glycerol-3-phosphate dehydrogenase	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR006076	Domain	FAD dependent oxidoreductase	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR031656	Domain	Alpha-glycerophosphate oxidase, C-terminal	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR038299	Homologous_superfamily	Alpha-glycerophosphate oxidase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11985	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004368	Molecular Function	glycerol-3-phosphate dehydrogenase (quinone) activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006072	Biological Process	glycerol-3-phosphate metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_034179-T1 global RNA-seq network