Gene detail

Detailed information of OS493_033876-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_033876-T1	CYTOKINE RECEPTOR	scaffold_276	112524	158474	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_033876-T1

ATGGCATTGGATGAAGGCGCACCGCCTTTAAATAGCACCGCCTTATTACAAGTGCGTATACATTACAATGTTACGTTCAAATACAACGACACAAACCCTTTTACGTATGTCATTCGTGGTGCGTTTCAAGTTGAGCCGCCAGTCATGTTGAGCAGCGCCCATGCCAAGGCTAGCCTGGGCTTGTTCTCACAGATGTCGGGTGAATTTCAGGTTAAAACAGGAAATATTCAGCGCTTAGAGAAATTCGAGATTTTGAAAGAACCCGCGTTATACATCAAAGCAACACTCGTCAGCGATTGGCCAGATTACCAGGTTATACGGATCGCGTTGCAGGTATCTGACCGGGACTTCAATGTCAAGACCGCACCAACGAAAGTGCATTTTAAGCTTATCAACCTGGCTACAAACTCGGAGGTAAATATCAACTGTGTTCCATCGACTTACACCGGAATATGTGTTGGACGTTTGCACGTTCCACAGGAATGGCTGAACACTACCGTTTCTGCTCACAAAGCTTCTGTGCAATATGGTTTGTTTCCTTCAAATATGGTAGAAATAAAACAGATTGCTCTGAGTGGCAAACAAATCCCTCAAGTTGAAGGAAACTTTGTAATCTTGGCGCCTTTGTATTTATTGAATACTGGTGATGCGTTTTTACTTGAGGTCTATGCTCGGTATCCAAAACTTGTGAAGTATTACACTTTGATTTTTACACTTTCGTCTGGTTTGAAGATAAACGGCGTGCAGGCTTCTCCGTCGTGGAACGTCCAAACAACGTTCAATGGAGCGAACGAGTTCGTGGTGTTTGGAGTTAGAAAAAGTGACCACAATGATGATATACCAGCTTCTACCTCGCTGTATTTCACCATCAAAATTGAAATCGCTGAAAATGCCATAACGGTGAACCCAGAATCCATGGAATGCATTGCGAAACATGTCAGCGACCAAGAAGGCAATCCAATGATCGATACACCAGTCAAAGCTGTTTTCCAAGACAGATTCGGAAGAAATGAAATAGGACGTTTTGTCGTTGTTGAAGATGGCGTCACAACTCTTTTTGTTGTCGCTGATTACTCGGTCATTGTAAACACAGCTGTGCTGAATGGAAGGCGGATTGTTGTCCCTGTGGCAGTGCATGGCGTGACCGCGTTGGGGCGGACCTTGAACGTGACGGGCGTGACTTGTAGAAGTCTTGATGTTACTGTTTTGAAAGTTGCACATGACTGCTCTAGCGTTTATGTAAATGGAAGTGAAACTCGCGGATCAACTGAAGCAATAATTGAGTTTTCACACAAAAATCTTACAGCGAATTCTTCCTTCATTGTGTGGACACCGACAATTCCTATTTCCTTGAGTGTCACGCCAGCAAAGTTGAGGAGAATACGTGACTGGTACGATCCTAGTGATTCGTGTAAGTCACGCTATCAGCATGCACGCGTGACAGTAACGACGGAGTTTTCGAATGGCAAGGAATCATTCACTGCAGTCGATGTTACGCAGCACGTTAAAGATAACATTAAAAGCTCGAATATCAGCGTTGCTGAAATTGTTGGTTTAAATATTCATGGTAAAAGCGTTGGGAAGGCCACTATTGAAGTTTACAACTCTGAACTAGATCAAACACTCGGTGATGTGATTGTGGAAGTTATCAATGAGGACACAAGAGTGTATATTCTTAATGCAGTTATAGCAACACGGGTATTCGTTGTTCTACCAAAGTCACTAAACACCTCGCTACAGCATGCAGTCAACGTTAACATGGATCACAAGTTTTCTATCCCGGGAGACGAGGGCTCGGTTGTCGTATCTTTGCAGTATAGCGATGGAGTAGTGAATACGTTTGACAACCTGAACGGCTTCTACGTCAACTCTACAAACAACAGTGTTCTTACGGTGCAAGGGGAAAACATTACAGCGGTTAACGATGGAAGCGGGAATCTACTTCATGTCATCATGCACTCGGGTCACTGCACACAGAAACCAACCATCAGCTCACGCACAAACGTTGACGTCACTTTCCAGGAACCAGTTGCAGTGGTCCTTACTTTAAGCTCAAGACAAATAACCCCCCATGGGGACCCTGCCGAGGCGATTGGTGTACCCTTGTCCACAGAAATAACCGTGACTCTTGTTTACAATGTTAGTGGTCGCGAAGAACGCCTTGATGTTTCAAATGACAATCGGACAATTTATAACCTTGAAGTCGGCGGTGCTTTGGTAAATTTCGTTGAAACAGAGCGTGCAATTGTTGTCTCCGCTTCCGGTGCTGGCTTCGGTGAAGTTGAAGTGTCAATCAAGTTTACGCATGTTCAATCGAGTAGTAAAGTGGTCATTTATGTCATTGGCGCTCAAGAACTGTCCTGTTATGCAAGTCCACACCCAGCTTTTAACTCTTCGACGAATGTAAACGTTACTCGGTTGAATCCGATTGGAAACTCTGGAGAACATCAACAGGCGAGATTGAATCTGATTCTGCTTCTAACAAACGGAACAACAAGCGACATTTCAAGAGACGAAAGGGCACGGTTCGAGATCGCAGTGGCTCAACCAGCTGAGCTTGCTCAGAACAGCTTCATCAAAACCTCTAATGATGGGTATCGCGTGGTGTCGGTTCAGTGGAGAAATGAGAGGGGTCAGCTGTCAATTAATACTAGTTTTATGGGCGTGTCTAGTTACGTGGTAACCCTGCAGATCGAGTCAACTCCTATAACAGTGACATCTGTAGAGCTTGCCATGCCACCGAACTTCACTCTGAGTGGTTTGAGAGATCGTTCAACTTTGCAACTTACCGTGAATCTTGAATTTAGCGACAGTTCTAAACTTCTTGGGCTCTTTAGCTCAGAAAACACAACGTTGTTTGATTTAGTGACTTTCAGTACCCAGGATACAACAAAACTATCGCTGAACGAGTCCAGTGGCTTAGTCACCCTGAAAGCCAATTCCCCACAAGAAGTACGCGTTACTGTGTCTGCAGTACAATCTCCCTTGCTGAAAGACTCCTTTGCGTTCGCCTGCAACTTAGACCCGGATGTTGGTGACGTGGATATCGGTGACGTCACTGGTGTCGCGCTAAAGCCCGCGCATGTCGGAGATAGTTTTGTAGCCGCTGTGCGCATTAACTCTGGAAAGCTGGTGCTAGGAAGCTTCGATGTTGAAATCGTTTATGACACTGAGTTGTTGGAGGTTATCACTGTCAATGAAGGTACAGACATGATTGGTTTCTTTATCGCTGACAGATTGAGCCAAACCGGAAAAGTGAGAATCTCTGGAGCACTCAGTATCGAGAGCCAGGACCATCGCATCCGCCATGTTGCAGATGTCAAGTTTCGAGTCGTATCAAGCGGCATTGCCGGTGTTAGTGGAACTGTTATGATGATCGCTACTGACGATCTTGTTGGTAGCGTTATTGGGCTTCCTGTTCCTAGGAATTTTGTGGCGGGAGATATCGAGATTGCTACTGACAATACCTTGGGTCGCCAGCGGAGATCTCTTGTATCGAAATCAAAACTTCACTCGCAGTCCTCAAGTAACGCTCGTAAGAGGCGTTCTGTCGTTGCTTGTCCCAATCCCCCTTGCTCCACTTGTCCAAACGGGAAGAGAGAGCCTGGCGATACTGATGGCAACTGTATTTTCGACATAAGAGATGTAAAGTTCACGTTGGCTTACATGACGGAGCAGCAGTTCAACTTCAGCCGCGCCAAGGGACAACAGATACAGAATTATATCACGCAGCAGCAGCTACAGGCTTTGGATGCAAACGGGGACGGATCAGTGACCTTAAATGACGTTAATCTACTACTAAGAGCTAATCTGAAACTCGTTTCGTTGCTTCCTACTCTTACAGTCGTCCCAGTTGAAGATCCCAAGTCCCATTGTCTTCTCACCATTTCTGTGTCTTCCACCGAGCTTGGTGTTCAACCTTCTGATGCAAATCGTACAAATATTTTCTTCGATGTTTCGCACTCTGAACAAAATTTTTCCAACAGTTTGCGTGAGAGTATCTTTACAGCAGGGTCTATAGATACCACTGACAAAGGAATTCCCGGTGGAATTATCAATGCAGAATTTAACACTGCGAATAGAAGATTTGTGGCATCATTGAACACCTCGCTGCTCTATGCAAGCGTTGGTTTGTCGTTCGTTCAAGTTCGCTTTGCAAAGGATGGGTCGTTTGACTTCACAAGAACTGTCATGGTCAATGGATTATTCACCAGGCCTCCGCGTTATCCAGGCGTCCTTAACGCTACTCTCGACCTAGGCAATGGAAGACGCTACAGCATTATAAGACCAAACGGCTACAACCCTTACACTTTCTTCAGTAATGCTTTGGCGTCATCCAATTGCAGTGATGCTCCTCTCCTTGAAAGCGATCTTTTCTTGAAAGCTCTTGGCGCAAGGAAACTCTTGGCGTCCTGGAAGCTTGCAAATGTAAGACGAGGATTAAACTTTTCGTTCACTCTGAGCCTGCGGCTTTGTGATCCAGCGCAGCTAAACGAACCTTGTGAAATCCGTGCGTTGCGAGTGACTGGAACTAACCATACCGTGACGGGCCTCACACCGTACACCAACTACTCGGTTAAAGTAGAGACCACAGGGATACCACTGAGAGAGACACGCTGGGAGGCTATTCGCACATTCGAGTCAGTACCCGAGGGAGTTGATCCTCCTGCTTTGGAAGTCTCAAGCTCTTCTTCAATGAACGCCTCATGGACAGAACCTCGACAACCTAATGGCATCATCATTAGTTACTCATTGCACATGCGCAGTTTTTCCAGTTACTCCGTCCTTTACCAAGGCTCCGGCCTGTCGTATCACGTGACTGGACTATCCGCTGGTCAAGAGTACTTTTTCTACATCATGGCCAATACATCTGTTGGTGGCACAAAGAGTGCTGTTGTTGGTGCCTCTGTGCTTGCAGTAAAGATACCAGCTTCAGGAGCGCGCAAGACAGATCTGTCAATTGAGGTTATCGTAGGAATCACTATTGCAAGCGCCGCCTTCATTGCTCTGTTGATCATTCTTCTGGTGTGGCTCGTCAGGAAACGCATTGAGCGAGAACAGCCAAGTATGCTGGATTATCACTCGCTACACAAGTACAATTCTTTGGACGTCAATGATCGGGACAACGTATTAATGATGCAGCTAAGGTCGAGCTCAAGTCTGCGAGACACAAGTTCCGCGAGAGGACGAATGTATGAACATCATTTCAGTATGGATGGACTGGAAAATCCCTGGAAGGAGCAGGACTTAAAAGATGAATCTGGGCATGACGCGCTTACTATGGTGAACCACGGGAACTTTGAACCAGTCTCCGCGCGAACTCAGAACTGGGACCCAGGCTACGAGGAGACCGTTCTCAAAGAAGCAGCCCAAGAGATGAATGAGCTTGATGTAGCAATGAAAGAGAGCGTTGACAGCGAGGGGCGTATGAATGGCTTTAGTGGTCAGCTGCCTTCTCTTAGGGAAGATAACCTCGTTCACATGTCGAGGCTATCTCACAACCAATCCTCTTTGAGTCCAGAAAACACGAGTAAGAAGAAGTTCAAGAAAATGAAGGAAGGCAAACAACCTACCAGTGAGGGAGCCGTCGAGTGGGACTACTATTACGCCAGGAGCGCATTAGCGGATGATGGCGACTATGGACCTGGGGAACTTGCGGATACGAGGACACGTGGTCAGATACGAAAGGCGCGCCTGCTGTTAGAGGAGATGCTCCAGCGGTTATCAAGTGGAGACGTTAACAGAGAGTTCAGTGCCCTGAAAGCTGAGAGGACAGAAGGAACTTATCAATGTGCCAATAATCCAATTAATCTGCCTAAAAATCGCTACAAGAATATCCTTCCTTTTGATCATTCGCGAGTGAGCCTGGAGATAGAAGAAGGTCAAGAGGACGCCGATTACATCAATGCGAATTTCCTGGATGGATTTAAACAGAACAATTCTTACATCGCAACACAGGGCCCACTGAACAACACCATCGCTGACTTTTGGCAAATGGTTTGGGAGCAAAACGTTCACGTGATCGTTATGTTAACGAGACTGCAAGAGGGCAAGAAGGTCAAATGCGTCAAGTATTGGCCTGACACGGATGAAGAAGTGACATTTAGAGATTTTGTGATCACCAGCACTTACAAAAGAAAACTGGAGAGTCGTGTGGTCCGCCGTTTTCTTCTTGAACATTCTGGCAGCGGCGAGTGTCGAGAGCTCACTTACTTTCAGTTCACTGCTTGGCCTGACTTTGGTATCCCATCATCCCCTGCGGACTTCCTCGAGCTCTACTATGAAGTGATGCAAGAGTACAAATCACTTCCGGTTCCCGGGACCCCCATGTTGGTCCATTGCAGTGCGGGGGTCGGAAGGTCCGGGGCATTTTGCGCCATTAACAACTGCCTCCACTCGTTTAGATCCACGGGCAAGATAGACGTGGAAGAAGCCGTCCGGGGCTTGAGAAAGCAGCGTGCTGGAATGGTGCAAACGTTAGAACAATACGCGTTTTGTTACAAGAGCCTCGTTCTCGCTCTGTTGTACCAGATCAAGTTAAAGAAGCTGAAGGGAATTTCTCTGTTGAGCCAATCTGTGGCCTCGTCAAGTGGTGTGTGGACGTCCGCTGAAAGATCTTTAAGTCCTCTAGAAACTAGCTTCAGTCAATCACGACTTCAAAGCCCAGCTTCCGAAATAACTCAGGAGCCCGTGACGTCACAGACTGCGCCTCCATATTCATACAGTCAGCGGTTGCTCCCTCCAGTGGGAGCTTATGAAGACCCGCGTGCAAAACCCGATGGAGACGATCTGCCTATTGTGGTTGTCCATTCTACTCCAAAGAAATTTGTTTCAAAACAAGATTCCCTTCCTTTGGCATTGCACGAGAGCAAAGAGACCAAAGACGAGGGAAGTGATAGTACGGAAGCCCCCCTCGGGGATCACCGGAATTTGGACGTGCCCGTGGGAGAGACCGGTCGAAGGAAAACAACAGGAAATATTCGACGGCGTCCTGATCTTGGGGAACCCCCACCGCCACCTCCTCCTCCGCCCCCTCCCCCTCCCCCTCCGCCTCCCCCTCCCCCCTGTTCTTTTCCGTCCATAATGCCAGATGAGAATGGCTTCAGTGATGATGACTCACTGCCAGAACTTCCCGAAGTCGATTATCCTAATTTCGAGCTATCCGAGGACGATGATGAATCTTACCCTCCACCCCCAGTGGCACTTTGTCTCCCGGCTGACGCAGAGCAACCAAACCAGTTTGACTCCTCGGCCTAA

Transcript

OS493_033876-T1

Protein

OS493_033876-T1

MALDEGAPPLNSTALLQVRIHYNVTFKYNDTNPFTYVIRGAFQVEPPVMLSSAHAKASLGLFSQMSGEFQVKTGNIQRLEKFEILKEPALYIKATLVSDWPDYQVIRIALQVSDRDFNVKTAPTKVHFKLINLATNSEVNINCVPSTYTGICVGRLHVPQEWLNTTVSAHKASVQYGLFPSNMVEIKQIALSGKQIPQVEGNFVILAPLYLLNTGDAFLLEVYARYPKLVKYYTLIFTLSSGLKINGVQASPSWNVQTTFNGANEFVVFGVRKSDHNDDIPASTSLYFTIKIEIAENAITVNPESMECIAKHVSDQEGNPMIDTPVKAVFQDRFGRNEIGRFVVVEDGVTTLFVVADYSVIVNTAVLNGRRIVVPVAVHGVTALGRTLNVTGVTCRSLDVTVLKVAHDCSSVYVNGSETRGSTEAIIEFSHKNLTANSSFIVWTPTIPISLSVTPAKLRRIRDWYDPSDSCKSRYQHARVTVTTEFSNGKESFTAVDVTQHVKDNIKSSNISVAEIVGLNIHGKSVGKATIEVYNSELDQTLGDVIVEVINEDTRVYILNAVIATRVFVVLPKSLNTSLQHAVNVNMDHKFSIPGDEGSVVVSLQYSDGVVNTFDNLNGFYVNSTNNSVLTVQGENITAVNDGSGNLLHVIMHSGHCTQKPTISSRTNVDVTFQEPVAVVLTLSSRQITPHGDPAEAIGVPLSTEITVTLVYNVSGREERLDVSNDNRTIYNLEVGGALVNFVETERAIVVSASGAGFGEVEVSIKFTHVQSSSKVVIYVIGAQELSCYASPHPAFNSSTNVNVTRLNPIGNSGEHQQARLNLILLLTNGTTSDISRDERARFEIAVAQPAELAQNSFIKTSNDGYRVVSVQWRNERGQLSINTSFMGVSSYVVTLQIESTPITVTSVELAMPPNFTLSGLRDRSTLQLTVNLEFSDSSKLLGLFSSENTTLFDLVTFSTQDTTKLSLNESSGLVTLKANSPQEVRVTVSAVQSPLLKDSFAFACNLDPDVGDVDIGDVTGVALKPAHVGDSFVAAVRINSGKLVLGSFDVEIVYDTELLEVITVNEGTDMIGFFIADRLSQTGKVRISGALSIESQDHRIRHVADVKFRVVSSGIAGVSGTVMMIATDDLVGSVIGLPVPRNFVAGDIEIATDNTLGRQRRSLVSKSKLHSQSSSNARKRRSVVACPNPPCSTCPNGKREPGDTDGNCIFDIRDVKFTLAYMTEQQFNFSRAKGQQIQNYITQQQLQALDANGDGSVTLNDVNLLLRANLKLVSLLPTLTVVPVEDPKSHCLLTISVSSTELGVQPSDANRTNIFFDVSHSEQNFSNSLRESIFTAGSIDTTDKGIPGGIINAEFNTANRRFVASLNTSLLYASVGLSFVQVRFAKDGSFDFTRTVMVNGLFTRPPRYPGVLNATLDLGNGRRYSIIRPNGYNPYTFFSNALASSNCSDAPLLESDLFLKALGARKLLASWKLANVRRGLNFSFTLSLRLCDPAQLNEPCEIRALRVTGTNHTVTGLTPYTNYSVKVETTGIPLRETRWEAIRTFESVPEGVDPPALEVSSSSSMNASWTEPRQPNGIIISYSLHMRSFSSYSVLYQGSGLSYHVTGLSAGQEYFFYIMANTSVGGTKSAVVGASVLAVKIPASGARKTDLSIEVIVGITIASAAFIALLIILLVWLVRKRIEREQPSMLDYHSLHKYNSLDVNDRDNVLMMQLRSSSSLRDTSSARGRMYEHHFSMDGLENPWKEQDLKDESGHDALTMVNHGNFEPVSARTQNWDPGYEETVLKEAAQEMNELDVAMKESVDSEGRMNGFSGQLPSLREDNLVHMSRLSHNQSSLSPENTSKKKFKKMKEGKQPTSEGAVEWDYYYARSALADDGDYGPGELADTRTRGQIRKARLLLEEMLQRLSSGDVNREFSALKAERTEGTYQCANNPINLPKNRYKNILPFDHSRVSLEIEEGQEDADYINANFLDGFKQNNSYIATQGPLNNTIADFWQMVWEQNVHVIVMLTRLQEGKKVKCVKYWPDTDEEVTFRDFVITSTYKRKLESRVVRRFLLEHSGSGECRELTYFQFTAWPDFGIPSSPADFLELYYEVMQEYKSLPVPGTPMLVHCSAGVGRSGAFCAINNCLHSFRSTGKIDVEEAVRGLRKQRAGMVQTLEQYAFCYKSLVLALLYQIKLKKLKGISLLSQSVASSSGVWTSAERSLSPLETSFSQSRLQSPASEITQEPVTSQTAPPYSYSQRLLPPVGAYEDPRAKPDGDDLPIVVVHSTPKKFVSKQDSLPLALHESKETKDEGSDSTEAPLGDHRNLDVPVGETGRRKTTGNIRRRPDLGEPPPPPPPPPPPPPPPPPPPPCSFPSIMPDENGFSDDDSLPELPEVDYPNFELSEDDDESYPPPPVALCLPADAEQPNQFDSSA

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF16070	TMEM132	Transmembrane protein family 132	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR031437	Domain	Transmembrane protein family 132, middle domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036439	Homologous_superfamily	Dockerin domain superfamily	Interproscan
IPR050713	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000272	Biological Process	polysaccharide catabolic process	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_033876-T1 global RNA-seq network