Gene detail

Detailed information of OS493_033567-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_033567-T1	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	scaffold_268	82169	96229	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_033567-T1

ATGGCGGCTACAGACGGTAATATTTCTGATGTCGATTTGCGTCGCCAACTCAAGACTTTTGGTGAAGATGTCGGGCCTGTAACTGATACTACGAGGCCTTTCCTTCTTCGAAAATTGAAGCGGTTGCAGAAAGAACCAAGGGGAAATCAATCGAGTGCAGAAAAGCCGTCTCCTAGGCGAGCGAGTCAGTCTCGCAGGTCTTTACCCGCAACTAGTACAAGAAATCAAAGTCCGTCTCGAAAGTTGATCGGATTTTCGAGCGATGAAGAAGACGCAGGAGAAAGTCATTCAAGGACTTTAGCAGATTCGAGTAAGTTAAGGGGTAGGCGTAGGGAAGGAACGACTACTGCTAATGAATCGCCGGGACGAGCAAAGTCGAAGGCGACGACTCCGACGCGGAGAAGTAGTTTAAGGCCGCGAGAGCCGAGCTTTATCGCCAGCGTTCCTGACAAAACTTTAGATTCTACAGATGGTAATAATGGCGAATTTTCAGATTCCGACGGACAAGTCTATCGCAGGCCAAAGAGTCGAACTATTGGTATAAGTAATTATTTACGATCCTTAAAACGGGAAAGAGCTCTAGACGAAACTGAAAGTAGATCAGACACTGGTCATCCGTCAACATCGTATGAAAACAACGAACAAAGCGTAACTGCTGATCCTTCACTTCACGAGAGACACGCTGGAGCCAAGCGTGTGAAAAGTAGCTCGTTTTGGTCCTCGACAATCAAGATTTTATTCGTGATAAGCGCTGTCTGCATGGCTGTCTTGTTGTTGTATGCGACCTTCAAGAGCCACTCGAGCGAGAACATGATCTCTGCGGACTTAGTGAAACTCGCAGTTTGCCCAAGTGGTTATCCACTGGAGAACTCTAAGGAACCGACACCTGATTGTGTAACATTAACAAATATCAGCAAGGGATATGCAGACTTGTTGTTTAAAAAGCTCATTATTAAAGCAGGTTTATTTGAATGTCAAGATCCAAGTACGAATAACAGAAATGTTTCCTTGGGAGAGTTTAAAAAACAAATCAAAGATGATAATCCATCAAGAAAGGCTGATGATCAAACCAGGATCTTTAAAAACACATTAGAACTGATTCTTAAGTCTGATTGGAAAATAAGATTGTTTGACAAGACTAATGAGGAAACAGATGTTATTGCAAATGTGACATGGATTGATACATCAGTTTCTTCAAAACCCATGTTATGCCGCATCAGAGAAGCAATGTCCCGCTTGGCTTACCTCTCTTTCTTGATTGGGTTTGCCATTGGAGGATTGATGATTGCATATTTTATTGTGCGGCAAAGATGGAGGAGAGAGGAGGAAGAGACAAGGCTGATGTATCAGTTTGTGGAAAATATAATAGACATATTACGTGAGCATCATGAAGCCAGTAAAACAGAGAAGAACTTGTTACCATATCTTCCAATCCCTCATGTTAGAGATATGCTGATTCCACCATCTGACAGACAAAGACTGTCCAAAGCATGGAACAGGGCTGTTCGGTTTTTGAGCGCAAATGAATCCCGCATTCGAGTGGAAAGCCAAAGGATAGCTGGAGAGGATTTTGAAGTTTGGCGATGGATTCATATCGCTACACCCAAACCTCACACCCCCAAACTGTCACTTTCAGGTACCAAACATGGTAAATACTGGCAGGGACAAGCATTTGAAAACTTTCAGTCAGCTGTCAATCCACCTGTGATTAGTCCCACACCGTGTTTGAAAATAAGGAACATGTTTGATCCTGATGTTGAAACTGAAGATGGCTGGCATGTGATGATTCAAGACGCCATATTGGAGAAGTGTATTGAGAATGGAGGAGGAGTCGTTCACATAGCGGTGGATAAAAGTTCTAGTGAGGGATGTGTGTATGTAAAGTGTGACACACATCATTCAGCAGGGTTGGCCTTTAGAAGTCTACATGGTTGTTGGTTTGACGGTCGTCTTGTTGCTGTCAAGTATCTAACCTTGAAGAGGTACCATCAGCGTTTTCCAGTAGCTCTGGAAGCGACCGAGCGCCTGAATCCTTCAGGGGCTTCTCCTTCCTCTCTTATTACATTTGATCCCAACGAAGCGGAAGATGAGGAAGACATCAATGATTCAGATACAGAAGTTTATTAA

Transcript

OS493_033567-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03020	LEM	LEM domain	Domain	Interproscan
PF09402	MSC	Man1-Src1p-C-terminal domain	Domain	Interproscan
PF15519	RBM39linker	linker between RRM2 and RRM3 domains in RBM39 protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003887	Domain	LEM domain	Interproscan
IPR011015	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR018996	Domain	Man1/Src1-like, C-terminal	Interproscan
IPR029123	Domain	Splicing factor RBM39, linker	Interproscan
IPR034394	Domain	MAN1, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR041885	Homologous_superfamily	MAN1, winged-helix domain	Interproscan
IPR052277	Family	Inner Nuclear Membrane ESCRT-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13428	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006998	Biological Process	nuclear envelope organization	Interproscan
GO:0030514	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_033567-T1 global RNA-seq network