Gene detail

Detailed information of OS493_033536-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_033536-T1	BONUS, ISOFORM C-RELATED	scaffold_267	353726	355900	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_033536-T1

ATGCACAGCTTCTGTAAAAGTTGCATCGAGAGTCTCGCCGGAAATGTAGCTGGTAAAGAAGGGGTTGTCGTTTGCCCGATATGTTCCTCACCGAGTGAACTTGGCAGTAAAGGAATTGATGAGCTGCCGGTCAACTTTCTCATTGCAGTAACACTTAAGGATCGCAAATACGCGGTTGAAGAAAAGAAAGCTCCGATCAAATGTGGAAATTGTGAAGACAACGCGGAAGCTACAGGGCAATGCAGAGATTGCGCGGAATTCCTCTGCGACAAGTGTACGTCTGCTCATAGAAGAGTGCGTGTTACAAGGGAACATCAAATTATCCCTCTTAATGAGCTAACAACTAACGACGAGGAAAATAATAATAATTTGGAAAATCCCGATAACTGCTCGGATCACAGCCGCGAAGAACTGACGTATTTTTGCCAAACGTGCAACAAGCTCATTTGTCGAGAGTGCACGGTGTTGAATCACCCCAACACAACGCACGCATTCGAGCCGCTCAAAGACGCGTCCACCAAGCACCGACAAGAGATAACCGCACTGCTAGACGCGATTAAAATGAGGAGTCCCTTCGTTAAACGAGCTTTGTTGGAGATAGAAGAAGCGTGTGGGGACATTCCGCAGCACGCTCTTGCCATTGAGGAGCAAATTAAGAGCTCGACGGCCCGCTATATGCGCGCGTTAAAAGAGCGCGAAACACAGCTATTAGATGACTTGGACGCCATGAGAGAATACAAAGCAACATTGTTAGACCAACAAAAGGAACGCTTGTACAAAGGAATCAGAGATATAGAGAGCAATTGCGGACTGATTGAAAAGATGCTGCAACAAGGAACTGCCGCCGAAGTTGCCGGGGTAAAAGATTTTATGACAGGGCGATTACGCAGCTTAACAAACATGATTCAAGACATGTCGCCAACTGAAGGACCAGAATTTGATTACGTCACTGAAGAAGACTTGTTGTTTGACGTCATCAACCGAGGCGGCAAGATAGAGAGCAGCACCAGGCCTCCCGCTGTGCGACTTATCGGGGAGGGCCTGTACAACGCAGCAGTTGGCAAGACCTCAAGTTTCACACTGGCTGTGCGGGAAGGCGCATTGATAAACAAGCACGACCTGGACGTTCGAATCGAGACTCCAGATCTAGTGATCCTCACTTGTAACGTAACGGAGCACAGTTCACGCATTTACACGCTCAGTTACATGCCAAGAATTCACGGAGAACACGTGATCACGGTTCTGGCGAACGGAGAGCAGGTAGAAGAAAGTCCTTACACCGTGAACGTGAAGAAGGGACACATGTGCTTCGCCACCAAATCTCTTCCCGTTTGTTTACGTTTTGGTTACAAAGGGAAGGGAAGAGGCGAACTAAACAGTCCCTCTGACGTTGCTGTCGCATGTAACGGTGTTATAGCTGTAGCAGACACGCTGAACGATAGAATTCAGCTTTTCACAAGCAAGGGAGGTTTTTTGCGGCGGTTTGGAAGTCCAGGAGAGGATGTTGGCAAGTTAAAGTCACCGACCGGTATTTGCTTCTCTCAAAATGGCCAAATAGTGGTTGCCGATCAACAGAATAACCGCATTCAAGTCTTCAGTTTGGAGGGAGTGCTGTCTAAAGTGATCGTATGCAAGGGGCGTAATGCGGGGGATTTTAAGAATCCCACGGGTGTAGCCGTCGACGAGGAAGGCCAGCTACTGGTTACAGATCAACAGAACCACAGAGTTGTGGTGTTCAATAGCAATGGAGTCTACTGCAACCAGTTTGGATCTTTGGGGACAAAAGACGGAGAATTCAACAACCCTTCCTACATCACTGTCTGCCAAGATGGCGAGATTTTCGTCACTGATACGTCAAACCATCGAGTGCAAATTTTCGACCCGACCGGAAAGTTTCAACGAAAGTTCGGCAGACCCGGCACCGGGGATGGCGAGTTCCATTATCCCTCGGGAATAACAGTTGATTCATCCGGGTATATTTTCGTTTCTGATCGCACCAATCGCGTGCAAGTGTTTAACTCGCACTTGCGTTTCGTCACCAAGTTTGGCGGGAAACTGAGTGGCGACGGTCAGTTGAGCGGGCCGCTTGGGATTGACTACACTCCAGAAGGCCGGGTTGCTGTTGCTGACGCTGGGAATAACTCTGTTAAGGTTTTCTATTTTCCCAACGAGTAA

Transcript

OS493_033536-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF17170	DUF5128	6-bladed beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_033536-T1 global RNA-seq network