Gene detail

Detailed information of OS493_032375-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_032375-T1	SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1	scaffold_239	417644	449734	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_032375-T1

ATGTGGGAGAAGAGATGGAAAGAATTGATGCAGTGCATGGATCTTCGTGAGTTTGAAGCAGGATATCAAAAGGAGGTCATCAACCATTTCGCTCAGGTGCGCGAACTGGCCAAGAAAATGCTCCAAGAAAACCACTATGCATCCAAAGATATCAAAAGCGAAAAGGAGTTTCTGGACAGAGGTTGTCGGAGCTTTGCCATGCGCATGAACAGAAGAAGAGACATCATTCTGACGTCACTGAAGTTTCACAAGAGTGCAGGGGAGTGCTCAGTTAACTTGGATGATCTGTTTGAACTGCTGTGTTCCGACTCTGTTCTCATGTATGATTACGAGACCGCAGAGAGCATGCTCAGAACACTGGAAGAGAAGGCTGAAGCCGTTGCTGTATCGTCCGAGGACACGCTGCGAGATGCACTGGCCGCGCAGGAACTGATGACTAGTAAGGTCGCCAACATGCGCGGTGATGACGTCACCCCGGAACACAGCAAGGGCATTGCGCATGTGCGACTGACACTTGACGAGCTAAGGGAACGGAAGCTGCGCACGGACGAGCTGTGCGATGTGCGCAGAATCAAACTACAACAACTGCTGCAGCTCAAACAAAGCGAACGAGACGCTGAACAGGCGACTACATGGATAAGTCAATTGCACGACGCTACAGAACACAACCTGGGTGATGTGGGACGGAACGCTGAGGACGTAGAGGCCTTGCAACAGGAACACGAGAAACTGGAGGCCACGGCTAGAACAGTTCCTGCAAGCTTCGTTAGTTCTTCGACGAACATGCCGCTACGAGCTGTCACCAAACTATCAAATGGAAGAGAAGTTGAACAGCGCCTGGACAGACTTCTCATCATCTATGGCGGAGCGAGGGCGAGATTATCTGTGGCGCTCATGTTTCACCGAAGCGCGGAGAAGCTGGTCCAAGAAATAGAGGAGCTCAGAGCTGCATACATGAGAGAGGACCTCCCAGAAGACCTCACAGCCGATGTAGTCGAGGAAGAAATCCGCCGTCACTCTGACACCAGACATGCAATTGACAAAGAATACGCCGAGACCGTTGCCATGGGAAAGGCTTTGATTGACAGAATGCAATTACCTCCTCTCTACGGAGAGGACGGGGCGCCGAATCGTCCTCCTCACCTGTTAGAGGAATCCCTCGTGGACTTGGAAGAAAGAAAGATCGCTTGGGAAAGAGTTTGGCAAGACAGAGATGAACGACTTCGTCACTGGTTGCGGCTTGGAGACTACGAACAACAAATGGGCGAGCTTCTTCTGTGGGTGAAAGACAGAACGAACGAAACAGAGGAGAATAAACACGTGATCGGCGAAAACCTAGCGGAGGCCGAAGCGCTGAGTACAGAGCTCCAGGAACTGGAAACTAGGCTCAAGGACAAAGAAAAAGAAGTTGCTGAGCTCATCCAGATAATCAAGTCACTTCATGTAACTCCAACAGAAGACGAAGGAGCAAGGCCGTATGGAAGGATGGCAGATTCTTTAGAGGAGGCCTGGAATGACCTCAATGTGCAGTTAGAGGGAGGAGAATACTTCTTGACACTTCTGTTGCTTTTCATCACAGTGTGGAGGAGGTACGTACATGTAGTTGTAAGGTTCTCTGACAAGATTGATACCACACAAGATGAAATCAGCCGAGTCCTTTTAGCTGCAGATGTGACGTCATCATCATCATTATTTCATCAACATCAGGAGCTGAGGAAAAGCGTGTTGGAATTATCCATGCAGACTTTATCCAAAGGACAAGCCCTGTTGGACAAATTGCGCGAGGCCAGTACACATGCTGATATCAACAACCGCCATGCCACAAAAGCAGCATGTTACAGTGTCGAGCGAATTCTAGAAGCTTTGCATCACCGACGGCAACAGGTTGATGATCAGTGGAAAGAGAGGAAAAAGGTTCTAGAGCAATGTATAAAGAGATGCAAGATTGATGAGGAAATACAAAAGGTCACACAGTGGCTGAATGAAGAAGCAGAGGATTATCTAAGCTACCAAGATTATGGAGACTCTGCAGCATCAACCCAAGCTCTCCTTGATGAGCACTCCAAGTTTGAAGAAGCAGCAAAGGAAAAGGAAGAGGCTGGCCACAGACTTGCACGAGAAACAGATAAACTTGTGAATGGCGACTTCAGCGACATACAAGACACACAGCAGAAGATTACCCAACTACAGACAAACTTGCAGTTATTCAAACAGCGTGTAGAGGACAGAAGGAAACTGCTGACAGACACAATAGCCTTTTACAAAAATAACAGAAAAGCTCTTACCAAACTTGATGAAATTGGTGACAAAATAACTGAAGAGAAACTGACAGTTGAAGATCAAAAAGAGCTCTATGGTGCAATTAATGCCGCCTCAGCAGCACAACTGCGAGATGGGAAGATGCTACAGGAGAAGCTGACAGATGGCAAACACCAACCGGTGATAGTAAGAATGTATGAAGAACTGCAAGAACGAAGCACAGCTATGCTCGTCAATGTGGAACCTGATCCCGCTAACAAGGAGTTTGAAGATCTTTGTGGATGGATGAAGAACGTTGGTGAAGACTACCTTGATCACAATACTGTGATGGGCGATTCTGTCAAAACATCACAGGATTTCTTGTATTCACATCAGGAACTTGATTCTGAGAGACAGGCACTTGAGGGCACAATAGCTGAAGCTCTTGATGTATCAAATGCACGATCAAAGACAGACATTGCTAAGGTGCAAGACATGCAAGATCTCTGGACTAGGTTCACTGCTCGACTTGAATACAGGCTGACGTTAGGAAAAATGTACTTTGATTTCCATCGACACAGACAGCTGCTTTTCAGCAAACTGGACGAGCTCTTTAGCCAGCTGACAAGTGATGAGCCGAAGGAGAATGTTGACGTATCACCAGCAATGCTTGCACGGCAGGAACAGCTGCAGGATGCCATTCTTTCAGCATCCGGGCAAATGCAGAAGGAATCACAAGCTCTGCTGGATGAACTGCGCAAAGAGCCCAGAGAGGAGCATTTGGACAGAGGAGCAGCTGCTGATTGCATACAGAAGTTCCTGGCCACACTGGAGTCAAGGGTCATAAACTTGGTTATCTTATGGATCAAGGAACAAAGTGATGCTTTTTTCCCAGTCAAAGTAGATTACAGCTCCCTTCCAGTTGATCCAAGAGAGCTAGAAGACAAGCTGCGACGGTTCAAAGATGCTGCTAGGCGCACAGATGAAGATGTTCAGTCTCATCTCCGTGCAGCGGAGCAGCTCTCGGAGGCAGAGGGCAGTTACAAAGCGGCCATCAGGGTCATCACAGATGAACTTCAGATTGCATATCAAAGGTTTAAGACTCTTCTGGCGGATTATGAGGTGCTTCTGTCCATGTCAGCAACATTTTACACAAGTGTTGAAAAACTGCTTCAAATGATGGATGACATGACTTATGGACTACGGACACAGCCTCTTCCAAGAGACATAAACAATGCACAGCTCCTTCTACAGGATCATCTTGCCGACTACCAGACAGTTCATGAACTCTACAACTTTACCACTGTCAGCGCCCAAGATGTCTTGAGCCGTGCTGCCACCTCAGCCGCCGTCTCTGTGTCGCGTGACGAGATCAAGGGTTTCCTTGAGAGATCAGATGGGAGACATGAAGAATGGAGGTCTCTGTGGGAGCATCATAAAGACAAGCTGTTGGAAAGTGTGCGACTGTGTGAATTTGAACAAGCTATCAGTGTGGTCAACCTAACTATTGAGGAGCACACTCGAGAGCTGCTTGCCCTGAATCGCAAGTTTGGCGTCACTTTACTTGATGCGGTTACTCTACTGCAAGAGTCTGATTCATTTCTTGAATGTGTCAAGCCTGCTGATGTAGAGGTTGGTAGACTGGTAGAAGAAGCAGAAAGGTTGAGACAGTTAAATCATCATGATGCACCCGCCATTATGCGGCAAGTGTCTGCAATGGAAACTCGCTGGCAGAGATTTTTGTCCAGGATGGAGGACCACAGAGCCATGTTGGAAGCATCAATAGAGTTTCACCAACTTTTTGAACAGGCCTCAGTTTGGATCAGTGACAGTGAACACTTCTTGAAAACCACACAAGATGGAGCGAAAAGATGCAAAACTGAGGAAGAAGTCATAGACCTTCTTGATATGCTGGAAGGCTTTGTCAACCTGGCCTCAACAAACAAGAGGCACGACTGA

Transcript

OS493_032375-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002017	Repeat	Spectrin repeat	Interproscan
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46607	SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005546	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0010314	Molecular Function	phosphatidylinositol-5-phosphate binding	Interproscan
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0043325	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0070273	Molecular Function	phosphatidylinositol-4-phosphate binding	Interproscan
GO:0080025	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_032375-T1 global RNA-seq network