Gene detail

Detailed information of OS493_032199-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_032199-T1	MICROSOMAL TRIGLYCERIDE TRANSFER PROTEIN, LARGE SUBUNIT	scaffold_235	362805	370827	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_032199-T1

ATGTGCAGTCAATACGTGCTTGTTTGCGTACTAATTCTACATGTTGCTGGTTTGCAAGGGAAAAGTGTCAGTGAAAACCAACTGCGACTGAGTCACTTGACAACTTGTACTTACGATTACGAAGTCACTGTTTACACGGCGAGAGGCGCTAGGTCGACTGCCAGGGATGGTTACCAAGTCCATGCTCTGGTCGATGTCACTCCCGCATCACGTGACTTCAATGGCAGAAATCATTCGCATCTTATCAAGCTGGACGTTCGGGAACCTCGCTTAAGGCGTGTGCGTTATGGGCGTGTCCTCACCAATCATCCTGTCAATGAAGAGTTTGAAGAGCAGCTGTCGAAGCCATTTTATTTCCATCAGGAAGAGCACGGTGTCGTTACAGACGTTCTTTTTCCAAAGAATTCTGAGTCACCGGAAATTGCGGCTTTTAAAAAGGGTATTGCAGGTGCATTTCAACTCAACCTGAAGGACGCGCAGAAATCCAACATCTATGAAGTGCAAGAACACGATGATTCCGGTATCTTTCGAGCCAAGTACAATGTCGTGTCCGCCAATGATACACACGCTCATCTTCATCGAACCTGGACAAACTTCGACTACCAACAATTTGCAGACGGTACTCCAGCGAAAGGAGAACACAAGATACAGTCTCAGCATAGCGCTCACGTTCATGTGAAAGATGGAAGAGTGGATACAGTTCACCGTACAAACGAAGCATTCTTTCGACCTGCCAATGGACATCCAAGGACGGACAATTTCAAAGGCTTTCAAGACCAGGAGCAAGACATAGAAATGTCGACCAGTGGATACAGTAGACTGACGTTAAGATCTTGTTCAGAGCCTGAACATCGACGTTCCAAGCGCTCTACCACTGAGGAAGAGCATCTGAAGACAGCACGTTCTCTCACCAGTGATAATCTGCTATTTATGGACACCGAGAAGATAAACTGGTCAAAGATCGGGGGAGAGAAGAAAAAGACTAGACCTTTCTATGAAGTGTTACGCTGCTTCTCTGACAAGAGCTTGAAAGAGCGAGACATTGGTGACTGTTCCAATGAGATGCATCGCATGGTTCGCGACGATGAAGGTGCTTTTCGAATGATCGTTAGACTAGTTCGTGATCGAAGTCATCAAAACCTGACGTCATGGTCGGTCTATGTAGCCGCGCTTGCAGGACACGGGAAATACGAGGCCCAAAATGCTTTAGCGCAGGCAGTCAAGACAGATTACCCGAGACCTCTTAGCAAGGAAGAATACGAGGCTCTACTGGTAGGAATTTTCTATTTACCAGAAGGTCCACTTCACTCGCGGCTTTTCGATGCCCTGTTACAGCTGATGTCACAAGAAGAGAAAGGAGATGAAGTGACATCTACGGCAATGCTGGTCTTAGCTGGTCTCGCTGAACGAGCAAAGAGAGCCGGATACAATGAAAGCTTGAGTGATAGCGTCGCCGAGATGGTCCACAACAGATACAGGAACAGGTCAACTCTTTATCATCCCGATAGCGAAGAGCACGAGATGCAGCTAAGAGACCACATCTGGGCGTTTGGAAATCTCGGTCATCATTCCGGACTTCCAGTAATCCTGGAACATATTGACCACGATAACTCTGGTATACGATCAGCGGTGATCTCAGCCTTGCGCAAGCTTCCTCCAGAGCACACGAATCAACACCTGATGTATGCGCTATACAGGGATGAACACGCCGAAGTTAAAGCTGCAGTTGTTAACGTCTTTGTTGAGCGCCACCAGCATTTAAGCGATTCAGTGGTTCAAGGCCTGGAGCATGCGTTGTGGCACGCCCCGGAAAGCGAGACCTTGGATTCATCCATAATCGAACTTCTTGAAAACCATGGTGACCATCCCAAAGCGGTTTACTTACGAAAGAGACGGAGTGCAATTCATCGCCGTAAACGTGCCCTATTTCCGTTTCTTCGTCCAAGGGAGTTTGCCCTCGGTCCCTCCAAGCGCTGGGTGAAGACGTACGGTGGTAAATGGCTGGGAGCAGAATCTGTCATACAGTTCGTTAATCAAGTCAAGTTAAGAATTGGCATTTTTGGTGGAAACTTTGAGGTGAATCTTGACAATTATGCACACGTTCAAGCTTACATCCTCAAGTTTGGTTTTGAAGTCGTCCGAGGTAAAGCTGCTTTCAAGGCTTCGGCTAGTTTTAAGAACGACTTCCCAAAAGATCTCATTCACGCCATTGCCGATGCTGGGGACGATTTACTGAAGCAGTTCGACAGTATTACAAGCGTGATTGCTGAACAGATCAACAGATTTAAAGGCAAACTAGCTGGATATCTGCCGTTGTACATTGACAAATTTGTAGACTTTGTCAACAAACTTGTTCAATTTGTGCAGAACCTTGTGCAACCTCTGCGACCAATTAACCTCATCAGTAAAGTGATCAAATTTGCCAAGGATGTGCTAAGCCGCGTCAAGGATTGGAAGTGGCTCATAGACAAGATCAAGAAAATACAGCAAAGTCTTGGAAGGCTGACTGTTGTGGATGACGTCTTCAAAAAAGTCATTGCAGCTCTGGACAACATTTTTGACATTGTCGGTGGCATAACCAAGTACTTGCCCCACAATTTACCGGGAAACTTTAACATCAAGAAACTTCTCGATATTCTTCGCTCGGTCTCCGTAGATCTTCACCTTGACAAAATCAAAGACTATTTCAATTCACTAGGTTTCTCCGTACCTGGTGGATTCCGTTTACAGCTTCCATTCAAGTTCACGATCCACTTCTCCTTTTCGCTAGAAACGTTTCAGCAAGTTATCTTGAAGCTACTGCGGTTTGCAAACCGTTTCTTGGATATGTCTTCGTTGCTGGATTTTCTCGAAGGAATCAGATTCCCCAGATTACAGCTACCAAACATGAACCTGCGATTCCCGTCGTTTCAAGGGAGTGGCTTCAACTTTGGCCTCCGTTTTGACTGGAGACTCAGCTTAAAGTTCAAACTTAATCTAAAATCTCCAAGCTTCCAGAATTTCATCTCTATTTTTACAAAACTCGGAGACTTTTTCCAGCAGTTTAGACTCCCGGGTTTTGATCTCGAGAAGTTTTCCAAGAAATACTGCCAGGAAAAAGCTTGA

Transcript

OS493_032199-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01347	Vitellogenin_N	Lipoprotein amino terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001747	Domain	Vitellogenin, N-terminal	Interproscan
IPR011030	Homologous_superfamily	Lipovitellin-phosvitin complex, superhelical domain	Interproscan
IPR015816	Homologous_superfamily	Vitellinogen, beta-sheet N-terminal	Interproscan
IPR015819	Homologous_superfamily	Lipid transport protein, beta-sheet shell	Interproscan
IPR039988	Family	Microsomal triglyceride transfer protein large subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13024	MICROSOMAL TRIGLYCERIDE TRANSFER PROTEIN, LARGE SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0005548	Molecular Function	phospholipid transporter activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0016323	Cellular Component	basolateral plasma membrane	Interproscan
GO:0042157	Biological Process	lipoprotein metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_032199-T1 global RNA-seq network