Gene detail

Detailed information of OS493_031364-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_031364-T1	ACYL-COA DEHYDROGENASE	scaffold_215	386229	411513	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_031364-T1

ATGGCTTTGAAATCTTCTTACTTGCTGTTTTATCCTAAGCAACCATACTTTAGCCAAGCTTCTTGGAAAGGAGCGATTGAGCCGAGATTTAGTGATGGTGGTGATGAGGAGATGAAGGATGATATCGACTCTGTGCGTGGTTTGTTGGACAGACTGAAAGATGAAAAGGAGAGAGAACTTCTTAAAGAGACTTCCTCAAGTTCTGTTCAAGAAAACAACAACGACGACAACTTTAGAAGTTCAGTTCAAGACACAAAGCAGGATGACGTGATTGGTGAACTTCAAAAGAAGTCATCATCTCTTGTGATGAATCTGAAGTCAGTCGTCAAAACAAAGGGGTCGTCAACGAAGACCGTTATCTCCAGCCAAAGCGATGCGACTCTGCAGAATGACGGAGATACTTCCAACAAAGGAATATCACAGAAGAGAAAACAGGATACATTCTTGGTGGAAGTACAAGAGAGGGCAGAGGTGATCAGTAAAAGTGCACGGAAAGCCCCAGAAACGCTGGTATCATCAATGGGACACAATGTAGAGGAAGATCCAGATACAGAGGAGTTCTTGAAGAAGATTCGGGCAGCACCCTCCAGCACGTCAAGTGAATTGCATATGGAGGAGAGCGAGACAAGATTGTACAGAAGTAAATCTGCATCAGAGGTCGATTTGTCAGTTGTGGTGACGAATTCCTCAACACTGAACCTGGAACCTCAAAAGTCCAAAATCCCACTAGGAAGGCAAGGCTCGTTAAAAGGACGAAGGAAACCCACGGCAGCTGGCAGACGAAGAAGTCTGAAGTCAAGTTTTAATGACGAGTTTCTGGACTGGGACGATTCATTTGTTATCAGCGAAGGAGAGGAGTCAATGGACGAAGAACACAGCGTTGTATCCGGTGGAAGCTTCATCATAAAGGACCCTCCTCAGATGGGTGCAGGAGGTGAAGTGAGACCACGAACCAAGCCTAAGTCCAAAGTTAAGAGCCAGACGGTGTCTGGGATAGCTCTTCCAGGACTAGCAGAGGCGTTAAGCAAGAAAAAAGTCGCGGCAGAGGACAAGCAGCGTTCCCAGGGTAGCGCGGCCGAAATTGTCCGTGCAGCTGCCGAGGGTAAGAGGAACATGGCAGCTAAGGAGGATAGAGTGGAGAAGGAACCGGAAAAACCGGCCTGGCTGGTGGAGGCTGAGACGCGGAGGAAACTCCACGAACAGCGGAGACATATAAAAAACAAACAACAAGGAGAGAACGACAGAGATCAGGAAGTGGAGAAACCGGTACAAAACGGTCCTGTTCTTCATTCTCTGCCTCACAGACCTGAACCGTTAGCTGATAAATCTGACAGTACTGCTAGTGTAAGCATTCTTCACAATGTCATGCTACGTCCCGTGCGCAAACCAGACGCAATCGCGACGAAATCCGACGATGACAGCGATGCTGGTAGGTCGTTAAACTTTTGCCTTCGTCCTGTGTCGAAACCGCCGGATCCAGTAGAAAGCCAAGCTGAGGAAGAGAGGGAAAGTAGTCGATCCCATAACGTTGTCTTGCGTCCTATACCTAAACCAGAGCCAGTGGTGAATGATAAAACTGAGGACTTGCCTGGAAGGATTCAACCGGTTCGTTTGAAACCCATCGTTTATCCCTGCGATATAAGACCGTCGGTTTCTTCTGTCACGGATCATACCGAAGTAGCACCGATGACTAGACGAACATCTTCCGAAGTGACGACTTCATCAAGCTATCCATCTGTCAAACCGGTCACGCAATCATTTTCACACACGGTAACGTCGTCACGTGTTCATGAAAACGGTGATGCGTCAGATCAGAGCTCATGGTCAGCGGGACCAGCGAAAACCTCTCCCGAATATCACATCCTCCGTTCGCTTGCACCAATAACTTCGGATAAACCGATGATATCACGATCGGAACCGAAGGTGTCCGAAAATTCTTCGTCGCATCTGAATGGCTCGCGAGTCACAGTTTCGTCCAATTACGTGAGTGTCCCTCATAGGCATGCTCCGAAAACAAGACCGAAACCGGGCAACAGGTCCAAGACAGTGACTGTTACAGCATCCGAGGTGCCGGAACTTTCAAAAGCTAGGCGTACGAGCGTGGAGTTAATACACGCCAAAGTGGAGAGGAAACCTACTCGGCCTGCTACGTCTGCCGAGCCAGCCAGTAACGCGATGTCGCACGGGGACCTGAGGGGACCCCGGAGAGGAAGTGATTTGCGAGACAGAGCGGAGACATTTGACTTGTCTTATAGACCACATTACACTGGAGATGTGTTACCGCAGTGGAAGATTGACCTCATCGAGAAGAAGAAGAACGTTGGAACTTCACGCGAGAGAGAGACAAACAAAGATCATCCCCAACAGACGCATACTTCAAACGCGGTTATCGTTCCATCATGGAAGAGAGAACTTGCGGAGAAACGAAAACAGCGCGTTGAAGTCAATGGCCTGATACAAACGTCCAACAAAGAGAACGAACCCAAGACATCTCCTGAAGTGCCGCAGTGGAAAAAGGAATTCGCCGAGAGAAGAAAACGCCAAGAAATGTCGCCAAACCGAGTACAGCCCGATAAACACGACAGGTCTCCTGAAACTCCCGAGTGGCAGCGGAGACTGACGAACACTCGACGAACTCAACCGATCGTCGTTCCGAGAGGTCCGTCGGAAGATTCCACAGACCAGGTCCCGAGTTTCATGAAGGAGTTTGAGAAGAAAAAGAGAACCTTTCCTCGTGGTGGTGGAAACACAAGCTACGTTTTACAAGAAATCCGTCCAGACTTAGATCATTTTGGACACAGAGTGGCCACTGATATAAACTCCATGGGAAGAGAATGTGAACTACTACCACCAAAACTAGAACATTTTGATGCATGGGGCCGGAGAGTGGACAACATTCAGACTTGCCATGGATGGCAACAGTTACACGATGTGTCAGCTGAAGAAGGGCTCATATCCATTCCTTATGAAAGAAAATATGGACAGTGGAGTCGTATATATCAAGCTGCCAAACTGTTCATGTTTTCCCCTTCCTCTGGCTTGTACTCTTGTCCATTGGCGATGACTGATGGAGCTGCCAAGAGTATTGAGGTTTCAGATTTAACAGAGAAGCTTAGTGTTCTACAGGATGCGTTCAGCCATTTGACCAGCAGAGACCCCAAGGAATTCTGGACATCTGGTCAATGGATGACGGAAAGAAAAGGAGGCTCAGATGTGGCAAATGGTACAGAGACACTAGCTGTTCCTCAAGAAGATGGCACCTACAGGCTGTATGGTTATAAATGGTTCAGTTCAGCTACTGATGCAGACATGACGCTCACTCTAGCAAGAGTACAGAACCCTGATGGCTCTACAGTACCTGGAACCAAGGGACTTACCATGTTTTATCTACAAACAAGAAATGATGATGGTAAATTAAACGACATTGAAGTGCAGAGATTGAAAAATAAACTTGGTACCAGGCAGCTCCCTACTGCTGAACTTCTTCTCCATGGATCACTGGCTTATAAGATGTCAGAGGAAGGCCGTGGAGTCCCTTGTATTACAGACATGTTAGCAATAACCCGTTTTCACAATAGCGTCAGTGCTGCAGGTGTTATGAGAAGGATTATGAGTTTGGCTCAAGATTATTGCATGAGAAGATCAGTATTCGGTAAATTGCTAGTGGATCATCCTCTGCACATGCAGACACTCGCTAGAATGGAGGTGGAGACCCGTGCAGGCTTTCTACTCACAATGGAAGTTGGCCGTCTGCTCGGCAAACAAGAGTGCAACGAGGCTTCAGATGTAGAATTACAGCTCTTGAGACTTATTACACCAATTACAAAACTGTACACTGCTAAACAGTCCATGCAGGTCACCTCAGAAGGTCTGGAGAGTTTTGGTGGTCAGGATACATAG

Transcript

OS493_031364-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF18158	AidB_N	Adaptive response protein AidB N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR041504	Domain	Adaptive response protein AidB, N-terminal	Interproscan
IPR052904	Family	Acyl-CoA dehydrogenase-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42707	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_031364-T1 global RNA-seq network