Gene detail

Detailed information of OS493_031131-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_031131-T1	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	scaffold_210	408814	429028	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_031131-T1

ATGGCCGGCCAGCACCTCCAGGTCTCACCAACCAGTGGTTACACTGGCAGAGTGACTTCGACGGTTAGTCCCTCAGTTTCGTTCTCAGCGGACTTCACATTATGGTACATTAAAAAAAGCGACAGGAGGACGTTTGAATGTAAAGTATATTTTACATCTGTGGCTAACCCTTGGATAACGAACCCCCTTGATCTCATTGTGGTTGTTAAACCAAAGATCACAATCAAAACAACAGTACCAGTCATTTTAACCGAAGGAGACACGAGAACTTTGTTATGTGTTGCCAGTGGTACCCCCAAGCCATTGATTACATGGATTAGAGACAATACAAAGGTTCAGCAAGATCCAAACAACTCTAACTACATAATAACATCAGCTAACAAGAACCACGCAGGGACGTACAGATGTGAAGCTGTAGTGACTGCTCCAGGACTGGGTCCATACAGGACAAATTACACAGTTGCCGTAACAGTGAGATACAAGCCCCAACACAAACTTAACAGTTTGATACGCAATGAAACCGTAGATTTAGGACGTGACGCAATATTTTATTGTCGGACAGAAGCATTCCCCATTGGTATTCAGTATAGCTGGTTTAAGGGCGACATCCAGATTGCCAATTCTGGAGATTACATCATTGATAATTTTGGAAATGGCGAGAGCAGACTGACAGTCAAACAAGCTAAAAGGAGCAGCGCTGGTCGATACTCCTGCTATGGAAGGAATGAGGTCGGAAATGGAGATAAGAAATCTGTTTTCCTAACTGTCAATTATGCTCCTCAGCAAATCACTGTGACACCGGATCCAGCAGTTGTCAGAGTTAACCAGAATATAACACTGACATGCAAGGCCGATGCTCTTCCAATACCTCGATACTCGTGGAAATTTAACGGAACTCTTCTGAGTAATGCTGTGCTAAACAATTTAACGTTAACAAATGCACAAGTAGAAGATGCTGGGAACTATACTTGCATGGCAGAAAACTTTTATGGCAGGAAAGAAACAACGAGAATGGTCAATGTAGAATATCAGCCAGTTGTTAAAGCATTCACAACCGGGACTCCTGAGAATACCGTAGTACAAGGAACAACTGTGACACTTACATGCAGTGCAAATGGTTATCCTGCTCCAACATACACCATCAAACGAGGGAATGAAATAGTGAATAGTACTGAAGGGAAGTTTGTGATCCCCAATATACAGCTTAGTGAAGAGGATTATACATACAGCTGTGAGCCAAACAACACGGTAGGAAGTGGACCAGTAGAACAATTGAAGATCACAGTACAAGTTCCTCCATCAATTTATGGTCAAACACTGCCAACAACTAAACAAGCAAAAAGAGAAAATACGCGTTTGAACTACTTGTGTAAAGCTCAGGCCAAACCTGCTGCAAACATCACGTGGATGTTGAATGGACATGATCTGACAGACAACCCACCTTTCGATATATCTTTGTCATCATCACAAGCTCATAAGCTTTGGAGTACCGAGTCATCCCTTACCGTCAATAAACTAACCTGGAGGCAAAGTGGTACCTTTACCTGTCTTGCTGTTAACGATGCTGGTAAAACAAGACAAACAACAGAACTTGACGTAGAGTATCGACCAGTTGTTCAGTTTTCTGCTGATCATCCTATAAACCTCACCCTGGAAGAAGGGGCAAATGCGACCTTCACTTGTAAAACAATCGGCAATCCACCCACAGTGAGTCATAAGTGGCAGTTCAATGGAGTCGACATACCAGGGAAAGGTTGCGGCAATGGATGCCCAACAACAATTCTAACAAAGCTTAAAGTTAATCAGTCAGATACGGGATGGTATTCTTGTACTGGAACAAATAGCATAGGAGAAGGACCTCCTGCTAGAGCACATTTATTAGTGAAGTATCACCCAACAATTACGTACTTCCCTCACAATGTGTCCACAGTCAATGAAACAAACAATGTTTCCATGGTGTGCCGTGCAGAAAGCGTGCCAGAGCCTACTATCACCTGGATAAAGACAGGCATGACTAATGAGATTCTTGCATATGGTGAACAGTTTCAAATAGTTAATACAAGCAGCCATGATGATGGTGCATACACTTGTATTGCAAGCAATTATCTTGGGAAGGATTCAAGGGAAGTCATTCTAAACGTCCAAACACCTCCAATTATTCTGACGTCCACCACCGCTGCCACCCAAATACCAGGCGCGGAAGGCGAACAAGTAGACTTAACTTGTATTGTACGTGGCAAGCCACCACCATCTCTGTCATGGAAAAGACAACTTAATGGACATGATCTGAACAACTCATTAAATGATGACAAAGTTAAGAGCATCACTAATGAGAAGGATACCAGTGTTATGAAAGTGACTGTTAGTAGAGTTGGTGAGAAGTTCCTCTGTGTGGCTGCAAACATTCTAGGAAGTGATAATCAAGAATATACTATACGAAATATAGGTGTCCCAGATGCTCCAATTGATGTTAAGCTGGTGGTATTCAAAGTAGATGGCGCTAAAACCGTGAGTGTAAATGTCAGCTGGACTCCTGGTTACAGTGGAGGATATGACCAAGTGTTTACAATCCATTATCGTGTAAAAGGAAGTGGCACAGAATTTCTGGAACAACCTGTTGGGCATCCTGGCAATAATATGCACACCATACAAGGATTGTACCCTGAAACAGAATATGAATTCCTTGTTCAAGCTTCTAATAAAGCTGGCAAAAGTAAAGCGTTAGCCTCGAAACAAGTCATGACACCAGTGTCTTCAATTCCACCTGATAGAGGAACCGTTAAAGCAAAGAGAATGTCAGATGACGCCACAGTAATACTGGTCACATGGACAATAACAGATCAAGTAGTAACAACTCTCAGTCTTGAGATCCAGGAGGGAGTGGTCGTGAGATCCAGGAGGGAGGGGGAGGGTCAGTGGAAGCCTGTCAAAGGAGCTGAACGTCTTGATAGATCTACAACAGAGTTTAAAGTGACTGATCTTAACGCTGATGAGAAATACAGGTTTAGAATGGATATACGACGACCAGGGGAGAAAAATCCTTTTTATGTGTTGAGTGAAATAGTACCAGATGGTCCTATCCCAGAAGAGAAAGGTGTTAGCGAACCCCTTCAAAACTGGATGATTGCTGTCATTGCCGGTGTTTCTGGTTTATTTCTGGTTGTCACTCTTGTTATATGTCTTTGCTGCTTTAAGCGTCGTCGCAAGAAGAAGGATAATGAAGCTGACAATGCTAACATGCATGAAACTTCAAGCTATGTAGTGGGTGGCCCAGAAGTCGCCCGCGCCATGGAAGGGCGTACCCACTATGGTAGAGAATCTGTTGAAGATGATCCATTCATTGTAGCTGCATCCATGCAGTCGTTGAACTCAGTTGATGGAAAAAAGAAGAAAACAGATCCCATTGTCAACTATGGATATATGTCAGAAGATTCTGTCCAACAGCAACCAGAAATGCTACTCATTCCAGGTTCCCGTCTGTCAAGGAACGACTCCGGTATGGCTCAGGGCACTGGGGAGCTGGATGCGAACTCAGCTTACCCTGCTAGAGGACCACAAAGAGATTTCAAGACGTTTGGATCTTCTTTTGAACTTGTTGGAACTGTACAGCGCAAACACGAAGACTCCATCGAGAAGCCACTTTACGAAGCGGTGGACCAGCAGCAACATGATTTAGGACCAAGGGTGTCACCTGTATCTTTAGAGTCCAAAAGACACAAAAGCCCTGTTAAAGAGCCCCTTGATCCAACGGTACCTTATGCTATTCCACAAAAGAAAAATAAGTCCAAGAAACCTCGCCATGAGCCAGCAATTGGGCCTCCCCCTCTGTATACCCCAGAGGACAGATTTCCTGAAGAGCTGGACGACTTAGATCTGGATGATCCGTCCAGTCTTCCACCGAGTGAGAGACCCCCAAACCAACAAGTACCTATGGCTATGTTGCCTAGCAACCGAGCATTACCTAATAATTACTGCGACGATCCACATGATGAGCTGCCTGAACCTCCAGCATTCTTTTATATACCAGGAAAAAAAGAGCCAAAATATGATTCAGACGATGCTAAGATGCGTCATCAACCACCACCTCCAGGCCGGAAAAGAAAGCCTTTCATCAATAGCCATGGTCAACTTGTGAGGCCCGACTCGCAAGATTCGGATGGTTTCCGGAGACCCAAAACTTTACGATCGCCACAAAACACGCTCACTCCAGAACGGGAAATGCCTTCAAACCAATGGCAGCCGTGGGGAACTGAGTCCGACAATAGAGGCATACCGTTACCTGATATAAATTATGTCAGTTATGTGGTCTGA

Transcript

OS493_031131-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_031131-T1 global RNA-seq network