Gene detail

Detailed information of OS493_030990-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_030990-T1	OXYSTEROL-BINDING PROTEIN-RELATED	scaffold_207	232665	273665	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_030990-T1

ATGGCGGTAGTAATGGAAGGACCTCTTTCTAAATGGACGAATGTAGTGAAGGGATGGCAGTATCGGTGGTTTGTGTTAGACGACAACACAGGGCTTTTGTCCTACTATACGTCCAAGGAAAAAATGATGAGAGGAACAAGAAGAGGGTGTTTACGTCTGAAGGGGGCAAACATTGGAATTGATGATGAGGATGACAGCACTTTTACTATCAGCTGCGATCAAAAGACTTTTCACTTTCAAGCTCGTGATTCAGAGGAGAGGGAACGTTGGATTAGAGCATTAGAAGACACAATCAAAAGGCATTCCCAAGCAAGAAAGAGACCAATGGCTGGCTTTCAGACCCTGTTTGATCCCTCCCAAGAAAATCTGGAACAGCGCTTAGCAGAAGCTGAAGCATATCAGAATATTTTAGAACAACAGATCAAGGCTTTACATACTCACATGAGTGCTGACACTGGAGCTCAAGATTCACAGAGATATGCTATTCTCAAAGATACTTCTACTGAAGTTAACATTGATCAATATCAAGTGCAATATGATAACCTCTTCAAGAAAATGCTGGAATCAATGAATCATTGTTTGAAGCAGATGTACACATTGAAGGAAGAATGTGAGAAGTCTGCAGAGAGTTCATGTGATCAGCCAATGATGCCTGTAGTCAGTGATCACTATTCTGATAAAATGTCAAACCTGTCCTTGGAACATGGCAGCAGCAATTCAGGTGATAATAAAGGCATGCAAGACACAGAACTCACAATAGAAAAAAGAACACTGAAGTCCAGTAAGAGTGATTCCTCACTCAATGTCAGGGACAAAACATCTTCAGTTTCCAGTGATGAAGAATTATCCAACCTACACCCACAAGTTGGTTACTCTGTGTCACCCACCCATGATGGGAATGTGGTGCCATTCACTTCATACTCAAGTAGTGAAGATGAAGATGACATGGAATTCTTTGACGCAGATGAGTTCCACGATTTGGAATCTGCTCCATCAAGTTCACCTCCCAGGAGCAACCCGTTCTCAGCATCCAAGAAATGGATGGATCGTGATGAATATGAAATAGAGGATGAGGACACAACAGGAGGAGGCCGTTGTTTACCAACTTTTATCCTTGAGAGACGATCGCTGTTGGAAATGTATGCAGATTTCTTTGCTCACCCCGATCTGTTTGTTGATATTGTGAACTATGCGGATCCTAAAGAACGTATGATAGCAGTGGTGAGATGGTATCTATCTGCATTCCATGCTGGTCGGAAGGGTTCAGTAGCAAAGAAGCCTTACAATCCTATTTTAGGAGAGACTTTCCGTTGTTTCTGGGTCCTGCCCGAGTGCGAGACGTCGAGAACAGAGAAATGTCAAGAAGATGGCCCAGTGCCCTGGGCCTCTGAAGATGACGTAACATTCCTTGCTGAGCAAGTGTCCCATCATCCTCCAATTTCTGGATTGTATGCAGAGAACTTTAGTAAAAATATTTCATTCAACGCCCATATCTGGACCAAATCAAAGTTCTTGGGACTGTCAGTAGGAGTAGAAAACATTGGGCAAGGCTGCGTGTCTGTTTTGCCGTATGACGAGGATTACATATTAACATTACCTAATGGTTACGGCAGGTCCATTTTAACAGTTCCTTGGATAGAGATTGGAGGGAAAACGAGCATAACTTGCGCCAAGACTGGTTATCAAGCCAATGTACAGTTCCATTGTCGTCCATTTTACGGTGGAAAGAAACATCGGATCACTTGTGAAATAATCGCTCCGGAAGACAAGAAGATCTTTGCAACTATCACAGGGGAGTGGAATGGACAAATGTTTGTCAAATATGCTGACCGAGAGGAGCCTGAGTTATTTATTGATACAATAACCATGCCAGCAGTGATGAAAATGGTCAAGAAGATTTCTAAACAACAAGAAAACGAATCCAGACGATTATGGAAAGACGTTACAATTAGCTTAAAAGACGACGATGTAGAAAATGCAACTGCCTCCAAACACAAGTTAGAGGAACGTCAGCGAACTGAAGCAAGAGAGAGAAAAGAGAAAGGAGTTACTTGGGAAACTAAGATTTACCCTCTTGAACCTTTCCGTAGGATATTTCACAGTGATTCTGCAGACCAAGTAAACACCATTTCCGGGGTAGTTTTTGGCGTGGTCACAGTTAAGATGGATTTTACTGTCTTGGTATGTTTTGCTGCAACGTTTACCGCGGTGTACACTAACCAAAACTTAGATACAGCGCGGAACAATGCGGTACAGCATGCGGACAGTGTTATACAGCCCGCAGCCACCCGGTATACAGCCAAGCACGGCAAACAGACGGCAAGGAGTGATGCCATTGTGTCGAGTCCTCACAAGAACTCTGATCCACCCAACTTGAAGCTTGCAGCATTCAATGTCCAAATATTTGGGACGAATAAAATGTCGACCCCAGGAGTGCCAGAAATTCTTGTTAAGATTATTCTTCGTTATGATATCATTCTCATTCAGGAGATCAGAGACTCCTCTGGTAAAGCCATTAAACACCTGTTATCATTAGTTAACAAGGATTCGACCGGCAGTAAGTACAACATCTCCATCAGTCCACGACTTGGAAGATCCTCCAGTAAAGAGGAATACGCATTCTTGTATAGGAAAGACGTTGTATCTGTTAAACGTGCTTATGTATACGACGACGGCAACGAAGACCAAAAAAACGATACGTTTGAAAGGGAACCGTACATAGTGCACTTTACTTCCACACGAACGAAATTAACAGATTTCGTGCTCGTCGCTATTCACACATCGCCGTCCAAAGCTAATCAGGAAATTCATGAGCTTGCTGCTGTATACGATGACGTCATCAGGCGGCTGAGCATCACAGATGTTATCATTCTCGGAGACTTGAACGCCGCCTGCAGTTATATGAGTGACAGTGATTGGAAGACCAACCGTTTGGCTAAAGACAAGCGATTCCATTGGCTCATTTCAGATTGTGTTGACACTACTGTGGCTGGAGGGCACTGCGCATATGACCGATTCGTAGTTGCTGGAGATGCCATGTTGAATGCAGTTATCGAATCAAGCGCGGGAAGTTATGAATATGGCCAAGATTTGGACGTCAACAAGACCATGTTGGAGGATGTGTTATCATTTTCATTGTCGTATGGAGATGAATTGTGGCATGTTGTGTTGTATCAGTGGTTAATTGACAATGCACTCACTGACAGGCTATTAGAGATCAAATCTCCGCACCTGGAAGCATTTCTCAAGAGATCATCCTCACAACAGCAGCCAAGTGATTTAAAGATCTTGGACTTGCTGTGGAGGTACTACGAGAAGACTAAGAACTACTCTGCGGCTGCTAGAGTTCTCTCTAGACTGTCCGAGAAAGAAAGGTGA

Transcript

OS493_030990-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan
PF01237	Oxysterol_BP	Oxysterol-binding protein	Family	Interproscan
PF03177	Nucleoporin_C	Non-repetitive/WGA-negative nucleoporin C-terminal	Family	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000648	Family	Oxysterol-binding protein	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR007187	Domain	Nucleoporin, Nup133/Nup155-like, C-terminal	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR016202	Family	Deoxyribonuclease I	Interproscan
IPR018494	Conserved_site	Oxysterol-binding protein, conserved site	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR037239	Homologous_superfamily	Oxysterol-binding protein superfamily	Interproscan
IPR042537	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10972	OXYSTEROL-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004536	Molecular Function	DNA nuclease activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006308	Biological Process	DNA catabolic process	Interproscan
GO:0008289	Molecular Function	lipid binding	Interproscan
GO:0015248	Molecular Function	obsolete sterol transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0032934	Molecular Function	sterol binding	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_030990-T1 global RNA-seq network