Gene detail

Detailed information of OS493_030834-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_030834-T1	RNA-DEPENDENT RNA POLYMERASE	scaffold_203	439145	450246	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_030834-T1

ATGAAACTCCCAGAGGAATTGTCTTTGTTAGCATGCGTAAGACAGCCTTCAAAGTATGCGAGCAAATTAAAAACTATCCCTGAAGTGGCAGAAAAGCTAAATCCTCAGCCTTTTGTCGGCCATGGACGGGGAAGTTATGAAGGAATGGCGTGGAAAGATGAACAAGAGGTTTTATTGAAAATGTTTAGATCAGGAGTGACGAAGCTTCTCATTTGCACCAGTGTTCTAGAGGAAGGGCTGGATGTTCCCGAATGTAACCTGGTCGTCCGTTTTGAAGGCACGGCAACCCTGCGGGTTCTTGTACAGTCCCGCGGGCGGGCGTCCCGCCGACCCGACAGCAAGTTTGTGGTGATCTGCAATGAAAAGGAAGAAAACGATTCAAAAGATGTGCTTCTCAAGGAGCAGAACATGGAAGAGGCAATTAGACGACTGATGCAAATCCTTGGCACTTTCGTTCATCGATGCCATTTTCGATTTGAATGGCCTTTGGAGCCCATCCTAGAGAGTGTTAAGATTGACTTTGACCACAGCCTCAAGATCTTGACGGTTTATTGGTCCACGCAAGGAAATTTGTACAAGTTTGAACTTCGGTACGATGAGCTTGAAGATTTCATACTCGTGGACAGCGATGTGGATGCTGAACTGAACAAAGTGTTTATCTCGACAAGACACCCTCCTCGATTGTATCAATGTGTCGACAACGATTTTCTACAAGATGTCCAAGATGTGAACGATGGTATTCAAGAAGAACAAGATGTTCAAGATGTCAACGAAGAGCAAGATCTTAACGAAGAGCAAGATGTCAACGAAGACCAAAATGTCCAAGATGTCAACGAAGAGCAAGATGTCCAAGATGTCAACGAAGAGCAAGATGTCCAAGATGTCAACGAAGAGCAAGATGTCCAAGATGTCAACGAACAGCAAGATGAAGACGATGGTTTGAGCGACTCGTTGGACGATAGGAGTGACTCGGAAAGCGACGACAGCTTCTCGACTGACGAAGAATACCCGGTTGTGGTAAGGAATTTTCGCGATCGTTCTTCTCCAGGTTACATCATCAACATGCAGAGGAAGATCTGGGAAAGAGTGTCAGATATCCAAAACAGTGAGAACGCTTGGAGTCAATGCTTCACCTACTGTTTCGCGATACCATCAAGGGAATCTCTCAATCTGATGCGCTTGTTAACCACAATCGAGAGAAGATTCGACAAAAAAGCATTTTATTGTCGCGTGAAGGAGAGCTATGGTAGATTTCCAAACGTGGACATTCCCACCGATTTGCCTTTTGACGTCAAGTACGCTGCACAGAGTGTCATCGGTTTTCATCCCGTTATTCGCGGAGGAGTAGAGCCTGGATCGTTCGGAAACCTTTTTCAAAGCAAACCTTCAAATGTGGTCACCACAGCTTTGGAGAAGTTAAAGAAAACGTTGGAACAAGACAAGTTCTGTGATCCCAGCAAGACTCTGCAAGCGCTGCTCAACCAAAACCGTCCATCGACTTCCGGGATTCATAATAGACTCGTGCCAAGCCACTGTGCTCTGATAAAGCGCGCGGTCATCACCCCAACGAGGCTACTGCTGTACCCACCGGAAGTCATGGTCAAAAATCGTGTGCTCAGGCACTATGAAACAGACGACTTCCTTTGCGTTAGTATTCGTGACGAGGATCTCTCTAAACTCTCCGCCGCAGGAGGAAGCATCGACTTAATTCTGGATGACGTGAAGCGTGCATTGGATGAAGGACTGGGGATAGCTGGCCAGCGGTTTCCCTTTCTGGGCTCCTCGAACAGTCAGCTTCGTAACCATAGTTGCTGGTTTGTCGGGCCCAGTTCTCAACCGGTGAAACACATACGTCGCTGGATGGGAGACTTCAGGACAATTAAGTGTGTCGCCTCCTATATGGCTCGCATGGGTCAATGTTTTTCTACCTCGATGGACACTGTAGGCATTGCGATCAGTGAAGGGATTTTTTGTAACGAGGTAAAAGACGTTAAGACAGCTGACCACAAATACTGCTTCTCGGATGGAATAGGCAAAATATCAGAAGAACTGGCCAAAGAGGTTGTCAAGAAAATCGCTAAACCATTCAAGCCATCAGCATTTCAAATCAGATTCGCTGGCTACAAAGGAGTCCTCGCGTTAGATCCCAGTCTTCCAGGAAAACGGGCTTCTTTCCGTCCAAGCATGCGCAAATTTGAGAGCTTTCACCGTAGGCTCGAAGTGATCATGTTGCTCTCTAACCTGGGAGTCCCGGATGAAGTTTTTATCACACTGCAAAGTGACATGTTGGAGAGGCTGGCAGGGATGCTGGTAAATGAGCCTGACGCTGTCGACTTGCTGGGAAATGGAGCCAAAATGGGCTTGTCCTACCACCGTTTATCGGGCGCAGGGGTACCGCTGACAACCGAGCCGTTCTTTAAATCCCTACTGGTCGCCATGTATAGAAATAGTATACATGAACTTCTCTCCCGAGCCCGCATTCGTCTGCCACCAGCGGAAGCACGTTTGATGATGGGTGTCATGGACGAGTTAGGTGTATTGAAACCCGGCCAGGTTTTCGTGCAGTATTCGGCGGTATCAACGCTTGCGGACCAAGAGGACGAATTCAACAGAAACATCAAACTTGTACTTAGGGGACCGGTGGTAGTGACTAGGAATCCATGTTTACATCCGGGAGATGTTCGGCAGCTCGAGGCTGTAGACGTACCAGGGCTCCATCATCTTGTGGATTGCATTGTTTTCCCGCGTCAAGGCTCGCGGCCCCATCCCAGCGAGATGGCAGGCGGTGATTTGGATGGCGATCTGTACTTCGTCTGTTGGAACGAAAGCCTATTACCAAGGAAACCTAATTTCCCGCCAATGGACTACCAGGCACATACAAAAAAGGAACAGGATGAACCAATCACAGCTAAAGACATGACCACGTTTGTGGTTGATTACATCCGGTGCGACCAGTTAGGAGTGATTGACAATGCGCACAAGGCCCTCGCAGACCTGGAAAAAGGCGGAGTTAAATCCCAGATCTGTCTTCACTTAGCAGAGCTTCACTCCCTGGCGGTTGACGCGCCCAAGACGGGATTGTGGCCCAAGATGCCGGAAATGCCACCGATAAAGAAGTATCCTGATTTCATGATGAAGTCTGATAAAGCCAGCTATCCGTCTGAAAAGCTGCTAGGAAAGCTTTATCGTCGCTGCCGAAAGTTTAAAGACGCGGCATCGGAGAGGTACAGCCAAAAAATGCGAGTCGACAAGTCATTTATGTTGCCTGGTCACGACAGGTACGTTAAAAAAGCACAAGAAGTCTATGAGCAGTACCGTGACAAGATGGAAGCACTGATGCGCTTGTACGGTATAGACACTGAGGCTGAAGTCTTCACCGGCTGCTTCTTGAAGCTTCGCAATCGATTGCGCAAAGAGAAAACCGAGATCGCAGAAATCGTTGGCGAACTTCTGTTCGCGTTACGATCCGACTTCCGACGTGATTTCTTTCGTGAGTTCGGCAAGGATGGGCAATGCTTGGTGGACAATGCGCTGATCTCGAACGAGATGCATCTAAAAGCGTCGGCCTGGTACACAGTAGCTTACACGCATGCGCATGATCATGCAGACGACCCGGACCCAGTCCCCGAGAAGAGATTGCTTGGCTTCCCCTGGTTTATCAATGACGTCATGCTCGCCATCAAAGAACGCAAAAAAACACTCGGTTTAGGCCAGGGTCTGGATGTTAAAGCAAGGGTGGGTGAGAGCCTTGCCAGACTGTTTAATGAAGAGAAGACGTGGTTACTTGAAGAATTCAAAACACGAGTAAGAATGAAGAACTCGATTTCTAGCCATCTCAAGTCCTTTCAACCCAACTGCTCGATTACTATGATAGGTTCTTCCGCGACACTTCTGCTTCACAAGAAGTCAGACTTGGATCTGTGTGTTTTACCACAGTCGATCCACAGCAGCAACTTGAGTGGGCTTCCTGTGGTGCCACCGGAAGAGGACGACATTTCAATTGAAGATCAAGCAAAGGCTCTTCAGCAGCTGAGTTTTCATCTGAAGGATAAAGAACTCTTTCGCAAAGTTCGTCTGGTCAACAAAAAGCATTTCCCGGTCCTTGTTTGTAAGCGGCCAACAGACGAGCTAACAGCTGGTGGCAGTTGCTCTTCAACCCTTTCTTGTGATTTGAGTTCTTCCCCAAACAGTTTGCCAGTGGCCATCTTGTTATCCAGCTACATGAAGTCCTATCCGCATCTGTTGTTGGTGCTTCGCGCCGTTCACCGATGGTGTTGCGTGACAGGATTGTCACGAAACGCGGCTGGTGCTGGAAACTCTTCTAACTTGCTGGCCAGCCTGCTTCTTGCTCAGTGCATGCGCAAGGGTCGCATTCAAAAGTGTACCGAAGAATTCGTCACAACCAAGAAGCTACAGCTACTACAAGGTGACGTCAAAGATGGCACCCAGTACATGGACTGGGAAAATACCATTCTCTTTCTTGACGAAGCTAGCAGTGATAACCCAAATGACCCACACCTCCCCCAAGCGGAGCTAGACACCACCCAGCTTGGTGAAATCCTCATGACGTTCTTTCAGACGCACGACTCGTCTTTTGAAAGAGAGCTCCCAGAATCCCTGGCGCGTGTCTTGCGCTTGCGTAAACTTTCAGAGCTGCTGGACAAAGAGCATTTACTCCTGGTGAAAGAACACATGCAACGCGGCTATCAGCTGTTAGCGTTGTATGGAGATGTACAGATCATGCTGGCCATAAGCGGCTCTGAAGATTACAACGTTATCTTCCTTTCTCCTCTTCTTTCATCCTTCATGGCAGGTATCGAGAAAAGCAAGGGTCTAGAAATTGCGAGGAAGACTGGAGCGACGAGCATAGTCATTCGCCCCAGTTTCTCCCGATCTCGAATTTCAACCATTCTCGAGGTGAAAGGAAGTGAGCCCGCCATTCGTGCGGTGGAGAGAGAGCTGGAGAGAATGACCACACAGGCGTCACGTGACAGGGTGTCACTCATGAGTGGCTGTTTCGTGGAAGATGCCAGTCTGCTGTTGTTTGAAGGCAGTCGGAATCAAAACGATCACGTGACGCTGATGCCATATGACGGGCCTTGTCATCAGACACACGATAACCTCGCACGCCATGTCGCTTTGTTAAACGAAGCCGTCTGCAACGAGTACGCGTTTCGCCGCTTCACAGATAAGTTTTTTCAACAGCTGCGGGTACTAGAGAGGGATTTCGATTCTCAGCTGCATGGCTGTCGTGAATTCGCCGTACCCTTTGGACGAATCTACATGTTTTGTGTGCCACAATCTTTGCTGGAAGACATCGACTCCATCACCTTTGCAAAACTGAGAGCAAATAAGCGGAGACCGAGAGTCCCGCAAAGCAGCTGCGAAGCCCCTTTTACGGTCACATACGTCGACCAGGAGGAAGAACGCGCCAGACGAAGGAGACGGCGACCAAAACGCGCTGTTAACACCGACGAAAACAGAAAGAAGCGGAAACGAGAAAATCCTTCAAGAAGCTCGTTTTACACAGTCGTACATTCGCCGGACAGAGTGAAGACATTTCTCGACAGATGCGGATTCCAGCCTGACACAAATCCTACGAGACAATACTCAATAGACATCTGTGACGAGGGTGTGGAATTTTACGTACGATTCGACAGCAACTTCAATTTCATCGAGGTCAAGTTTCCAAATCTGCGTTGGTGCATGGTAGATGTCAAGAGACCCTGGCAACAGCGCCCAAGTCATGACGTCAGACAAGATGGCGGCCAGGCAGATGATGACGTCATATTAGACGGTTGGGAGACGGATATACGCTTCCTTTTACAGTCCCGCTGTGTTTTGGGTCCGAGCGACCTCCGGGGTACAAAATACGCCAGGTACCAGCACATACTGGAACCCGGTAATCACGGGCAGCCTTTTACAGTCCAGGAAGACTTATGGAAAGATGTGAAGCTGGTCCGTTTGAGCAAGGTTACGAAGTTCACACGCCAGTTACCGCCACGTGGTTACTTGTGTGGCTTAGCAGTGCACCTTGGCGAGGTGACAGAGTACTCCAGACCACTACAGGGCGTGGCTGAATTCGGGAGAAAAGTCACTCGATGGGAGGCGTCGATGGAGGCCACGCTCCCAACAGATTTAACAGTGAAGGAGACCATGAAGAAGTTTCTACATGAAGTCTGGGAATTCGCTTTCTCTATGTCCTCGTTCGTGTCGCTGGTCCCAACACAAGATTAA

Transcript

OS493_030834-T1

Protein

OS493_030834-T1

MKLPEELSLLACVRQPSKYASKLKTIPEVAEKLNPQPFVGHGRGSYEGMAWKDEQEVLLKMFRSGVTKLLICTSVLEEGLDVPECNLVVRFEGTATLRVLVQSRGRASRRPDSKFVVICNEKEENDSKDVLLKEQNMEEAIRRLMQILGTFVHRCHFRFEWPLEPILESVKIDFDHSLKILTVYWSTQGNLYKFELRYDELEDFILVDSDVDAELNKVFISTRHPPRLYQCVDNDFLQDVQDVNDGIQEEQDVQDVNEEQDLNEEQDVNEDQNVQDVNEEQDVQDVNEEQDVQDVNEEQDVQDVNEQQDEDDGLSDSLDDRSDSESDDSFSTDEEYPVVVRNFRDRSSPGYIINMQRKIWERVSDIQNSENAWSQCFTYCFAIPSRESLNLMRLLTTIERRFDKKAFYCRVKESYGRFPNVDIPTDLPFDVKYAAQSVIGFHPVIRGGVEPGSFGNLFQSKPSNVVTTALEKLKKTLEQDKFCDPSKTLQALLNQNRPSTSGIHNRLVPSHCALIKRAVITPTRLLLYPPEVMVKNRVLRHYETDDFLCVSIRDEDLSKLSAAGGSIDLILDDVKRALDEGLGIAGQRFPFLGSSNSQLRNHSCWFVGPSSQPVKHIRRWMGDFRTIKCVASYMARMGQCFSTSMDTVGIAISEGIFCNEVKDVKTADHKYCFSDGIGKISEELAKEVVKKIAKPFKPSAFQIRFAGYKGVLALDPSLPGKRASFRPSMRKFESFHRRLEVIMLLSNLGVPDEVFITLQSDMLERLAGMLVNEPDAVDLLGNGAKMGLSYHRLSGAGVPLTTEPFFKSLLVAMYRNSIHELLSRARIRLPPAEARLMMGVMDELGVLKPGQVFVQYSAVSTLADQEDEFNRNIKLVLRGPVVVTRNPCLHPGDVRQLEAVDVPGLHHLVDCIVFPRQGSRPHPSEMAGGDLDGDLYFVCWNESLLPRKPNFPPMDYQAHTKKEQDEPITAKDMTTFVVDYIRCDQLGVIDNAHKALADLEKGGVKSQICLHLAELHSLAVDAPKTGLWPKMPEMPPIKKYPDFMMKSDKASYPSEKLLGKLYRRCRKFKDAASERYSQKMRVDKSFMLPGHDRYVKKAQEVYEQYRDKMEALMRLYGIDTEAEVFTGCFLKLRNRLRKEKTEIAEIVGELLFALRSDFRRDFFREFGKDGQCLVDNALISNEMHLKASAWYTVAYTHAHDHADDPDPVPEKRLLGFPWFINDVMLAIKERKKTLGLGQGLDVKARVGESLARLFNEEKTWLLEEFKTRVRMKNSISSHLKSFQPNCSITMIGSSATLLLHKKSDLDLCVLPQSIHSSNLSGLPVVPPEEDDISIEDQAKALQQLSFHLKDKELFRKVRLVNKKHFPVLVCKRPTDELTAGGSCSSTLSCDLSSSPNSLPVAILLSSYMKSYPHLLLVLRAVHRWCCVTGLSRNAAGAGNSSNLLASLLLAQCMRKGRIQKCTEEFVTTKKLQLLQGDVKDGTQYMDWENTILFLDEASSDNPNDPHLPQAELDTTQLGEILMTFFQTHDSSFERELPESLARVLRLRKLSELLDKEHLLLVKEHMQRGYQLLALYGDVQIMLAISGSEDYNVIFLSPLLSSFMAGIEKSKGLEIARKTGATSIVIRPSFSRSRISTILEVKGSEPAIRAVERELERMTTQASRDRVSLMSGCFVEDASLLLFEGSRNQNDHVTLMPYDGPCHQTHDNLARHVALLNEAVCNEYAFRRFTDKFFQQLRVLERDFDSQLHGCREFAVPFGRIYMFCVPQSLLEDIDSITFAKLRANKRRPRVPQSSCEAPFTVTYVDQEEERARRRRRRPKRAVNTDENRKKRKRENPSRSSFYTVVHSPDRVKTFLDRCGFQPDTNPTRQYSIDICDEGVEFYVRFDSNFNFIEVKFPNLRWCMVDVKRPWQQRPSHDVRQDGGQADDDVILDGWETDIRFLLQSRCVLGPSDLRGTKYARYQHILEPGNHGQPFTVQEDLWKDVKLVRLSKVTKFTRQLPPRGYLCGLAVHLGEVTEYSRPLQGVAEFGRKVTRWEASMEATLPTDLTVKETMKKFLHEVWEFAFSMSSFVSLVPTQD

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF05183	RdRP	RNA dependent RNA polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR007855	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003968	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_030834-T1 global RNA-seq network