Gene detail

Detailed information of OS493_030726-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_030726-T1	HSC70CB, ISOFORM G-RELATED	scaffold_201	432459	444587	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_030726-T1

ATGTCTGTTGTAGGGTTTGACGTTGGAAATGAGTCGTGTTTCATCGCCGTTGCGCGAGGCGGAGGCATCGAGACGATCGCAAATGAATACAGCGACAGGAGCACACCGAGTGTTGTATCGCTTGGAGAGACTACCAGGAGTATTGGCGTTGAAGGAAAAAATCAGATGATATTTAACTTGAAGAATACCGTGAGTCAATTCAAACGGCTTATCGGCAGGAAATTTAGCGATCCTGTTGTGCTGGAAGAAAAGAAGCGACTTTCTTGTCAACTGGTGGAAAGACCTGAAGATTGTATTGGTGTAAAGGTGCGTTATTTGGGGAATGAGGAAGTTTTTTCACCAGAGCAGATTATGGCAATGTTACTGACGAAGCTAAAGATGACCTCTGAGAAAGAATTATCCACAAAAGTTACAGACTGTGTTGTTTCTGTCCCTAGTTACTATACAGACAGACAAAGAAGAGCGATGTTGGATTCAGTATCCATGGCGGGATTGAACTGCCTCAGACTCATGAATGACACTACAGCAGTTGCCCTGGCATATGGCATTTACAAACAAGATCTTCCAACCGATAAACCAAGGAATGTGGTGTTTGTTGATATGGGACACTCCTCTGTTCAGGTGTCTGCCTGCGCATTCTTGAAAGGACATCTCAAGGTAATTGCGACGGCTGCTGATCCAAACCTTGGGGGCAGAAATTTTGATGAAATTTTAAAAGATCATTTTGTGGAGGAATTCAAGAAAAAGTACAAATTGGATGTTTCTACAAATGCCAAAGCTGGTGTCCGTCTCATTCGAGAGTGCGAGAAGATGAAGAAACTGATGAGTGCTAACTCCCAAGAGATTCCCTTGAATGTCGAGTGTCTAATGGAGGATAGAGATGTGTCGGGAAGGTTTAAGAGAGCTGATTTTGAAGAGAAGATATCCAGTTTGCTTGTACAACTGGAAGCAACACTTAAAACACTGCTGGAAAAATCAGGACTCAAGACTGCCGACATAGAGGCTGTTGAAGTAGTCGGAGGTTCTACTCGCATTCCTGCTATAAAAAGTGTCATAAAGGAAATATTTGACAAAGATGTCAGCACGACTCTGAATGCTGATGAAGCTGTAGCTCGTGGGTGCGCCTTGCAGTGCGCAATGCTGTCGCCAACCTTTAGAGTGCGAGAGTTTGTCGTCAATGATGTGTCACCGTATCCAGTTGTCCTCACATGGAAAAATACTGACGATGACGGAGAGATGGAGGTGTTTGCTGTTAATCATGCTTTCCCTTTCTCAAAGATGCTGACATTTTATCGAAAAGAACCATTTGATTTAGAAGCATGTTATGGCAAAAATGTCAATCTCCCTCTAAAAGATGGCTACATTGGGCGTTTTTCAATCAAAGATGTTGTGCCGAGTAAGGAGGGAGACTCATCGAAGATCAAAGTCAAAGTTCGTTTAGACATCCACGGTGTGCTAAATGTTGTTAATGCAAGCTTGGTAGAGAAACTTGCCGTGGCCCCAGAGCCTGAGGTGGAGTCCATGGAAGTGGAAGGACAAGATGAAAAGACAAAAGAAGCAAGTGATGCCGCTAGTGATGCCGCTAGCGAGAATTCCCAAGGAACAGATGAGCTTAGTGGCTCACAAGAAAAAGAGTTGAGTGAAGAACCAATGGATACAGCAGCTGAGACATCTGAATCAAAAGAGCAAAAGGATGATTCAAACAACAAGGAAGGTGAAGCGAAAAATGGCCAGGAAAGCAAAAACAAGAAAGATAATGGCGCACCAGCAAAGAAGAAGAAGCAGCAAGTTAAAACAGTTGAGCTAAGAGTTGAGCCATTAGTGCCAGAACTGACACATGCCCAGCTACAGGACGCTGTAGATAGAGAGTGTCAAATGATAGTTCAGGATCGTTTAGAGAAAGAGAAAGGAATAGCTAAGAATGCTGTGGAATCGTACGTTTATGACATGAGAACAAGACTCTATGGCGAGCTGGAGAAATTTATCACAGAGGAGAAATTAGGAGATCCAGTAGAGACAAGATGCTCGGAGTTTCCAAAAAGACCAGTGGCATTCGAGGAACTAGGAAGGAGTCTACAGCAGATCAAAAAAATTCTGGAGCTCTGTGCACAGAAGGACGAAAAGTACGAACATATCGAAGCAGAAGAAGTCAAAAAGGTAGAGGAGGCCGTAGCAGCTAAGGACGAGTGGCTGAATGATAAATGGAATGCACAGAATAAGCTTGCTGATCATCAAGATCCTGCTGTGTATGTTTCCGTCATTCTCTCAGAAAAAAAGCTCTTAGAAGACACATGCTACACGATTTTAGACAAACCCAAACCGAAACCAAAAGCCGAACCACCCCCACCCCCAAAGGAGGAAGAGCAGAAACAAGATGGCGACGCTGGGGATTCGAAAAACGAAGAAAAAATGGAGCCAGAAGGAGAGAGTGCGGAGAAACCTACTGAACAAGAAGAACAGCAAGAGGGCGAGGGGAAGAAATTAGATGCTGATATGGAGATTGATTAA

Transcript

OS493_030726-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00012	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013126	Family	Heat shock protein 70 family	Interproscan
IPR018181	Conserved_site	Heat shock protein 70, conserved site	Interproscan
IPR029047	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR029048	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR043129	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR050451	Family	Heat Shock Protein 70 (HSP70)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45639	HSC70CB, ISOFORM G-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_030726-T1 global RNA-seq network