Gene detail

Detailed information of OS493_030603-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_030603-T1	HEAT SHOCK PROTEIN 90 FAMILY MEMBER	scaffold_199	312983	324718	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_030603-T1

ATGATTGTATGTTCTTGTATATCAGCTACAGGATTGAAAGATTTCCAAGTAAGAAGCTACCCAAATATTTGCTGTAGAGCTTTGTCAGAAAATTCCACTGATAAGGAGCATTTATCCAAGAATGTGGATGAATGTGAAGAGGAAGATGACACTGTACATATTATTGCTGAAAATGAAAAAGTTGTTGGTGAATCACAAAGGCACGAGTTTCAGGCAGAAACAACACAGTTATTGAACATTGTAGCCAAGACGCTCTACTCAGAGAAAGAGGTTTTTATTCGTGAAGTGATCTCCAATGCTTCTGATGCTCTGGAAAAGCTGCAGTATCAGTTCATGACAGGAAAGGATGTTGCAGAAAATGAACTTCCTCTAGAAATCCACATTGCCACGGATCAAGAGAAAGGAACTCTGACAGTTAAGGATCATGGGATAGGAATGACAAGAGATGAGTTGTTAGATAACCTGGGTACTATAGCTAGATCAGGTTCTAAAGCTTTCCTTGATGAGCTCAGCGAAATAGGGCAAGGAGATGCACGGGAGAAAAGTATTATTGGACAGTTTGGCGTGGGCTTCTATTCTTCATTCATGGTGGCTGATAGAGTTGATGTGTACACACGTTCTTTTTCACCTGGCAGTAAAGGATTTATGTGGACTTCAGATGGGTCTGGCTCATTTGAGATTGCAGAGGCAGAGAATGTATCTCGGGGAACAAAGGTGGTCATGCACTTAAAGGAAGACTACAAGAATTTTTCCATCAAAACTACAGTTGAAGATACTATCAAGAAATACAGTAACTTTGTTGGCTTTCCAATATACCTGGATGGCACATGCATTAATACAATTCAGCCATTGTGGATGTTGGATCCCAAGGATATAAGCACTGAAGAACATGAGGAGTTTTACCAGTTTATTGGCAAGACATATGACAAGCCAAGATACACTCTTCACTACAAGACAGATGCGCCATTGAATATCCGAAGTATATTTTACATTCCTGAAACTCTTCCTCAGTTATTCACTGTTCAGCACATGGAGCATGGTGTGTCACTTTACAGTAGGAAAGTTCTTATTCAATCCAAAGCTCACAAAGTTTTACCAAACTGGCTGCGGTTTGTCAAGGGAGTTGTGGACAGCGAGGATATTCCACTTAACCTTAGTCGTGAACTTCTTCAAGACAGTGCCCTTATTAACAAGCTCAGTGATGTGTTGTCAGCTAGAATTGTCAAGTTTCTTCAACAACAACAAAAGAAGGATAGAGTTAAATATGAAAAATTCTTCAAGGATTGTGGCACCTTCTTCCGTGAAGGAATAGTAAGCACTAACAGTGACGAAATGAAACAAGAAATAGCAAAACTTCTGCTATTTGAATCATCTCACGAAAAGGCTGGAGTTCTGTCATCACTCCCTGTATATACATCACGCATGAAACCAACTCAAAAAAATATCTATTACTTGTGTGCTCCAAGTCGTGAAGTTGCAGAGACATCTCCATACTATGAAGCCCTGAAGAAAGATGATGTAGAGGTTTTGTTCACATATAATGAACAAGATGATATAACCCTACATTACCTCAGTAAGTTTGAAGGGAAGAGTATCATGGCTGCGGAGAATTACTTTTCAGTTGATAGAGAAGTCAAATCAGCTGAGTCAGTAGAAGAAACTCAAGCAGACCAATCATCAGACTCTCTTACTGAGGAGGAAGCAAAAGAATTAGTAGACTGGATGAGTATAATCCTTGGAAAACAGAAAGTCTCACTTGTAAAGGTATCCAAACATCTGAGTCAGACCAGTCATCCAGTGATGGTGACTGTAGCAGACATGGTGGCAGCTAAACACTGGCTCAAAGTTATGAGAGCTGAACAATACCAGGACATTGACAATGCCAAGTATCAGATATTTCAGCCAACACTGGAAATAAACCCAGGTACATACATAATCCACTACCTGTCTTCATTAATATTAAGCTTGGGTATAAACAGTCGTCAGAGCTTTATGATTGTTGACATTTTGAAGTAA

Transcript

OS493_030603-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00183	HSP90	Hsp90 protein	Family	Interproscan
PF13589	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001404	Family	Heat shock protein Hsp90 family	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR020575	Domain	Heat shock protein Hsp90, N-terminal	Interproscan
IPR036890	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR037196	Homologous_superfamily	HSP90, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11528	HEAT SHOCK PROTEIN 90 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_030603-T1 global RNA-seq network