Detailed information of OS493_030351-T1 in Lophelia pertusa Gene info
Gene IDAnnotationScaffoldStartEndStrand
OS493_030351-T1CCR4-NOT TRANSCRIPTION COMPLEXscaffold_194676673710441+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04054Not1CCR4-Not complex component, Not1RepeatInterproscan
PF12842DUF3819CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819DomainInterproscan
PF16415CNOT1_CAF1_bindCCR4-NOT transcription complex subunit 1 CAF1-binding domainRepeatInterproscan
PF16417CNOT1_TTP_bindCCR4-NOT transcription complex subunit 1 TTP binding domainRepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR007196DomainCCR4-Not complex component, Not1, C-terminalInterproscan
IPR024557DomainCCR4-NOT transcription complex subunit 1, domain 4Interproscan
IPR032191DomainCCR4-NOT transcription complex subunit 1, CAF1-binding domainInterproscan
IPR032193DomainCCR4-NOT transcription complex subunit 1, TTP binding domainInterproscan
IPR038535Homologous_superfamilyCCR4-NOT subunit 1, TTP binding domain superfamilyInterproscan
IPR040398FamilyCCR4-NOT transcription complex subunit 1Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR13162CCR4-NOT TRANSCRIPTION COMPLEXInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000288Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0017148Biological Processnegative regulation of translationInterproscan
GO:0030015Cellular ComponentCCR4-NOT core complexInterproscan
GO:0060090Molecular Functionmolecular adaptor activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for OS493_030351-T1 global RNA-seq network
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