Gene detail

Detailed information of OS493_030179-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_030179-T1	TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE	scaffold_190	523310	531905	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_030179-T1

ATGACTGTCAACACCAGTGATCCTAAAGAATTTCCAAATCTACGAATCGATGGAATGCTGGTGAACTTAACAGCGCGTGTTGGACAGAAGATGAAGCTTAATAATGGAACTGTTGTCATGGATATCCAAACGACTTTCAGTTCATTATCAGACGAGACAGGAGTTGTGCTGATATCTTTGCAATACGAATCAGGTCTAACAGTAACAGCTGACGTACGTCACAGTCACGCGATGGGCCGTCAGTACCTGAATGTGTTGATCACACCGACAGTAGCATTTAAAGGCCACACTGAGGGGCTCTGTGGAGTGATGGATAACGACCCGTCCAATGACTTTAAGGGCCCTGATCGAGAGCTATATAACGATCCTATTCAGTTCGCTGATTCTTGGCGTATAACCGCTGTCCACAACGACTCCGGCCTTCAAGGATCATGGTTATGGAATTCATCCAACTTCCACAGTGATGACGTAATGGACTCGTCATACAGCGATCCTAACTTTGACCCCGTGTACTCTTTAGATGGCATTGATGACGTCATTGTCGCGAAAGCTACTGCAGCTTGCTCGTCACTTGGTCTTACGGGGACAATATTAACGAGCTGTATTTATGACGTAGCTGTCACAAATGACACGTCACTGACTGATCAGGAGATTCTGCAGCAAGACTGCCCGGATCAGTGTTCTGGAAAGGGAAGATGTGTTAATGCCACGTGTCAGTGTATGATTGGTTGGTCTGGAGACAGCTGTCAACTGGGTAACTGCACAGACTGCTCTGCAAAGCATGGAAAATGCGTGAAAGGATTTTGTGAATGCGAGGATGGCTGGGAAGGAGTTACTTGTGAACAGAAAGCTACTTGCTACAACGTTAACAACTGTACAAGTCCAATCAACGGGATATGTCAGAGGACAGATCAATGTCGCTGTCATGACGGATATATTGGCCGTGACTGCAGCATTATTCCAACTTGCTCTAACGTGTCTGACTGCTCTGGACGAGGCATTTGTATTGATTATGACGTATGTAAATGCCAGAAGGAATGGACTGGGAACGACTGTACCCAGTTCTCTTGCGGATCTCTCGACTATTGCTCTGGTCATGGTCGCTGCGTAGCTCTCTATAAGTGTGACTGCGATTCGGGTTGGGCTGGAGCCAGCTGTGCTGTCCCTGATTGCGCAGGCGTCAACCAATGCTCTGGTCGAGGCGAGTGTGTGTCAAGTGACACGTGCCAGTGTTACCCAGGATTCCAAGGTGTCACCTGTGGTGACGTAGCAGATTGCGCGAGTCTTGGGAACTGTAGTGGACACGGAGTTTGTATGCAGGAGAAACAAGGCGCCAATCTTACTTGCAGATGTTACGCTGGTTTTAGTGGTGTTAACTGCAGTCTTGCCTCGTGTCTTTCCGTGAACAATTGTTCTGGCCATGGTCTCTGCTTAGAAGCGGATTTTTGTCAATGCGATGTGGGGTACACTGGGTCCGACTGCGCAAATGCATCCTGTGAAGGTGTTAACTATTGTTCAGGTCATGGCGTTTGCATTGGTTATGACACGTGCACTTGTGATCCTTTGTGGCATGGTCCAGCATGCAGTGCGGCCGACTGTTCCAGTCTCAATCACTGCTCTAACAAAGGAGATTGTATTTTACCGAATACTTGCGAGTGTTACCCGGGATATGACGGTGCGGCGTGTAACACGACAGCTAAACCAAACCTACACGCTCCTGTTTTTGCTGCTCCGCTGTACAATACGTCTGTGTTGGAAAACAGTCCAATCGGAACGAACGTTCTCCGAGTTCAAGCGAGCGATGCCGACTCAGGACGAAATGCACAGCTTCTGTTCTCGTTAGACGTCGGCAATGACGTGAGCCCCGCGTTCACAATCGATAGCATTTCGGGTGAAATCTTTACATCGTCGGCTTTGGATTACGAGAGTTCGTCTCCGCGCCTATTTAAGCTCAAGATTGTGGCTTCAGACAATGGTACTCCACGCAAGTCAAGTTTCGTGTTCATGTACATTAACATTTTAGACGTGAACGACCACTGTCCTGATTTCAACTCTCTTCACTCAAAATGGTTTAACATCTCACAACATACTCATACGGGAACTCTTCTGACAGTGGTATCCGCTACCGATAAAGACAGCGGGCTCAACGGAGAAGTGAGGTATAGCTTGTCATACGCCAGCAACCGCGATGGAACTTTTTCAGTGGGTGAAGAAAATGGCGAACTATCGGTTGTCGGTGAGCTAAAGGCGAAAGAGTATCGTTTGCAGGTTGTTGCACGTGACTTCGGCGTGCCATCGTGTTCCCGCCAAACTGACGTCACGGTGAATGTGTTTGCTGTGCCAGGAGTTACTGAATCTCCAAGTGAGATCACAACTGCAGTTACTGAAGCTGAAAATAACACCACAAGCGTGTTGACGAAAGCGATAATCAATGAGATTCCAGTGTCTGCTCCTACCAAGAGCTGGTACAAGAACCCTGCGATCATCATGGGAATTTCCATCGGCGGTTTCATCGTTTTAGTTGTTGTTCTACTTGTAGTTCTCGTTATCTTGTCCCGGAAGTTGAAACGAAGAATTAAACCGAAGGCCGACTACCCTCTCATCCGGGGTTCTCGCCTCGGAGGCATGACCGGAAGTGGCGAGAGCTCGCGCCGCTCTACGCCAGAGGAGTGTGGCGTCATCGAAGACTTAGAAATGGAAGATTTTGGAATCGTCTTGCGTGGAGTTAAGACCACAGAGGGATACGAAATGAAAACTATGCCTCGTATAGATTTTTAG

Transcript

OS493_030179-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF07974	EGF_2	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001846	Domain	von Willebrand factor, type D domain	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR013111	Domain	EGF-like domain, extracellular	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR051216	Family	Teneurin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11219	TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008045	Biological Process	motor neuron axon guidance	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_030179-T1 global RNA-seq network