Gene detail

Detailed information of OS493_030139-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_030139-T1	ANKYRIN REPEAT PROTEIN	scaffold_190	32907	44409	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_030139-T1

ATGGTCACTTTTTCAGCTATTGTAAAGCTTCTGATGTGTGGCGCTTTGACAGTAGTGTCTTTGGTCGGGAACACCATCGTCATCTTTGTGGTTTTCAGAACCAAGACAATGAAAACGAACACTTATTTTCTCATCGTGAACATGAGTATCAGCGATTTACTTTACACGGTCATAGCCATTCCGCCGTTTGTCATTCTCATTTTAGGGCATCCATTTTCCATCCATGGTCACTGGGGAACGTTTCTCTGCAAATTTGTCAACGGCATGGCATTTGGCCTAATCGCTAACTCTGTCTTGACATTAGCAGCCATTTCATACGATCGCTTCTTTGCCATTGTTTATCCACTGAGGACACTGAGAAACAAGGCTTATCTCAAATGGATCATTGCTTCAATATGGCTCTCCTCTGCTCTGGTCATGTCACCGATGCTCTACGCAATGCGCTTGCAAGATGACGGGAATTCCTCGTATTGCTACGAGGACTGGTCACCATATTTTGACACAGATAAGGCGTCAAAGACATACACTGTTGCATTATTTATAATGATGGAACCCTTTGACAGTCAACAAAACTCTCGTGGACGAGGAACAAGCCTTAGTTCTGTACTGGGGCTCAGCACTCCAGAAAGCGACTTCTCTCTTTCATTTGAAGAAAACTTTGCTGATCTACTTCATGGCTATCGTGCCAATGACAACAGAGTATTTAATAACAGTGCAAGAAGACATGCTGGAAGCCTGGATTCCATAGAAGAAGTCCACCAAAGAACTGAAGCAAATAAAGATAAACAAACTTCAACAATGCCAACCAGAAGAACAAGAAATGATCAGATCATTCCGATGCCATTCGCGCTTTGGTTCATCTTTGGAGCCAACGTTAACGCTTGCAATGAGATCGGGATGACCCCCGTGATATTAGCTTCCATAAATGACGACAAGAACGCAATCCGCCTTCTTGTTAAACGAGGAGCGAGAGTCAAGGAGAGAAGCGTTATGGGTCAGACAGCTCTGCATTTTGCTGCATCCAATGGAAGTGCAAACGCTGTACGGGAGCTTTTGAAGAGAGGTAGTGATCTGGAAATAAGAACAAACGAAGGATGTTCCCCACTGCATTTAGCAGTTCTACATAAACAGCCAGATACCGTTCAAGAATTAGTGGAGAGCGGAAGTGACCTTGAAGCAAGGGACCAGCACGGATACTCTCCGGTGCATTATTCGGTATTCTCTGGAAAGGCTGACATTGCAAAAATTCTTCTGGATAAGCAAGCTGATGTCAACGCAAAAGACAAGCATGACTTTACTCCACTGCATTTCACAGCGCAGAAAAACTGCGCTGAAGTTGGCCAGGAACTCATCAAACATGGAGCCAAGGTAAATGCTCAGACCAAGGATGGAATCACACCATTGATGATTGCTGCGTATCATGATAACAGACATGTCGGAGGTTTGCTGATAAGCAGTGGTGCAAACGGAAATGTCCAGTCTACCAAGTTTCTTATCGATCAAGGTGCCGATGTTGCTGCAGTTGATAACAGTGGCAACACACCATTACATCGCGCAGCTCAACATGGTCAACACAGAACTCTTCATCTACTTCTGCAGGCAGGAGATACGGCAAATGGCAAGAACAATAAAAGATTAACGTCGTTGATGATTGCTGCAAACAACGGCCATCTCAAATGCTGCAAAGGCCATTCAGATGTTGTTAAGCTGCTGCTTGAGCATGGTGGTGATATCTCAGTAAAAGACAAATGGGGCCTCACAGCGTTGCACAGGGCGTCAAAAAATGGACATTTGGAAACAGTGCAAGGTCTGGTGCTAAGTGGAAGCGATCCGAACTGTAAGGACAGTTGGGGTTACACACCTTTGCATCGATCAGCCGAGAATGGTCATGCAGCCACAACTACATTCCTGATCGATCATGGATCTCTGATCTCCGCTATTGACAAATGGCACTTTACACCGCTTCATCGAAGCGCTGGTAATGGCCATGTTAACATTGTACGAATCTTGTTGCTAAATGATAGCGAGATACACGCGAAAGACCTTTGGGGTTACACACCGCTTCATCGGGCTGCGGAAAGAGGACATACCAACACCGCCAAATTGCTTTACACACCACTGCACAGAGCTTCGCAGTATGGACACAAAGAGACTGCAGAGCTTTTACTTAAAGAGGGAAGTGATATCAAAGCCAGGACACACGCTTTAACATTGTCATCTTCGAGCTTGAAATCTGCGACAGCTTCCTCGACAGTGGAAGGAGGTGCTACGAATGAGGGTTGCTGCCAGGATGGCCATACCTCGCTGCATTTAGCTGCAGAGAATGGTCACAAGGAAACAGTCGAGCTGTTGCTGAGAGAAGGCGCTGATCTTCATGCTCTTGATCACTGGAACTGTCTATCATTACACAGAGCATCCGAAAATGGAAGTAACATTCACCTCACAGACAAATGGGGAAACACCGCTTTACATCGAGCAGCACAAAACGGATACACAAGTACTGTTGAACTTCTGTTGGCTAAAGGTGCAAATTCACACGCCGTGGACCAATCTGGGTCAACGCCCCTGCACTGCGCTGCTAGGCATGGCCACAAGGACACAGTCCGAGCCTTGATTGTGATTGGTGGAAGCAACATTCACGTCAAAGATCAATGGGGATATACACCTTTGCACCGCGCTTCCAGAATGGCCACAGCAAAGTCGTAG

Transcript

OS493_030139-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13857	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050663	Family	Ankyrin Repeat and SOCS Box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24193	ANKYRIN REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_030139-T1 global RNA-seq network