Gene detail

Detailed information of OS493_029775-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_029775-T1	HISTIDINOL DEHYDROGENASE HDH	scaffold_184	283831	290464	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_029775-T1

ATGATAATTCCGAGTCTTTATTTGAAAGAGGGAACCCTGGTGGATCCGAGAAACGGACAGAATGTTCAAGATGTACCTGGCTGCCTTGGTGCAATTTCGCTGTGCTCGGAATTCACCATCGTGTACCTTGACAAAGAGAAGGAGACCAAAGAATTTGGAATGAGCCTTGTTGATATCTCTTCCTGTGGTGTGCAGTGTGAAACGTACAATGAAGACGAGGTGTTAGATTTATTGGATAATGGTGCAAACCGTGTCATCCTTAACAAAGCTCAGCTGCGTGAGTTTGGTCAATTTATACCTAAAGAAAGGATAACATGCAAATTAAGTGATGCAGAACCCTCCGGCATTGAAGAATTAACAAAGGAAATTAATAACTTGAAAGAGAGAAGTTCAAGTTTTCTTTTGCCGTATAAGAAAGATTCTCAAGTTGACGAAGCATTACTTGTTGAGTTTACAAAGGAACTCAAGACCTCTCTATGTGATGATGTGAGACTCATTATCTCTGTTTATGAGGTGATTTCATACTCCACCATCACACAGCTTCACTCTCTTGGGGTTCAGGTACAGATAAGTGCAACTTGGCTGTTAAATGAACTCAGTCTTGGGCAGATCATTGCATTCTGTCTCAAAAGTGACCGCCCAGATGGACTTTTCCCCACTCTAGTGACAGATGAGCACAATGTATCCTTGGATTGTGTTATTCCAGTGCTGAAAGTATCCATGAGGCAAACAAGAGGATTATGGAGGAAGGGGCTGACATCTGGAAATGAACAGGATTTGTTAAGAATTTACTTGGACTGTGACTCTGATACCCTGAAGTTTGTTGTACGTCAACAAGGTCAGGGGTTTTGCCACCTTAACACCTGGACCTGCTTTGGAGCCAACAGTGGTTTGCCATCATTGATGAACACATTGAAGTCACGCAAACAGTCAGCACCTCCAGGATCCTACACAGATCGTCTTTACAATGACAGTAAACTACTGCATGCTAAGATTTGTGAAGAGGCAGAGGAACTGTGTGAAGCAGAAAGCAAAGAGGAGATAGCCTGGGAAGCAGCTGACGTTTTGTATTTCACGTTAGTGAAATGCACAAAGGCAGGAGTGTCTCTGGCTGATATTGAAAAGATTCTTGATCAGAGGTCCCTCAAGGTCAGGCGACGTCCTGGTAATGCAAAACCTGACAAACTGCACTCTTGTAATGTCCCTTCAGTTACCATAGCAACAGCACATGCTCCTTTAAAAATCAACCCACCTGCAGTCAACACATGTAACTCTATTTTAAAGAGCGTTGATTTTCAGATCCTTGGTGAAAATGAATTGCAAGACCTTTGTAAGCGTCCTGCAGTAGTAGACACAGTAAAACTAGAGGCCATAGTAAGACCTATCATGACCAGTGTACGAACCAATGGGGACAAGGCTTTGCTGGAATTAACAGAAAAGTTTGATAAAGCAAAACTTTCCAGTCCTGTGATTGATGTTTCTGCAGTAGATGAGCCCGTTCTGGAGAAAGACATCAGGGATGCAATTGATTTGGCTTACGACAACATCTACAAGTTTCACAAGGCTCAGCTAAACCTGGAGCCCCTTGTGGTTGAAACATGCAAGGGTGTGGTTTGCTCTCGGCATGTTAGATCCATTGAAAGAGTTGGCCTCTATGTACCTGGCGGAAGTGCTGTGTTGCCATCAACAGCACTCATGCTCGGTATTCCAGCTCAGGTTGCGGGATGTCAAGAAGTCATTCTGGCCACGCCTCCTAAACAAGATGGATCAGTCTCCCTTGAGATTCTTTACATTGCAAAGAAAGTTGGAGTTTCCAAAATAGTACTCGCAGGCGGAGCTCAGGCAATTGCGGCAATGGCTTATGGAACAGAAAGTGTACCCAAGGTAGACAAGCTGTGTGGACCAGGCAACTCATTTGTGACGATGGCAAAAATGCTGGTGCAAAATGACAGTACAGCAAGTGTCAGCATTGACATGCCGGCAGGACCATCAGAAATTATGGTCATAGCTGATGAAAGTGCAGATGCGTCATTTGTGGCAGCTGATCTATTATCACAAGCAGAGCATGGAACAGACAGTCAAGTGGTTTTAGTGGCTGTTAATTTGAGTGACAAACAACTTGACATTATTCAGAGTCAATTGGATGCTCAAGCAAAGAGACTTCCTCGTGAAAAGATTGTCAGAGAATCTCTATCAAAGAGCTTTGTGATCAAAGTATCAAGTATGAGTCAGGCATTGTACTTCAGTAACAAATATGCTCCAGAACATCTCCTCATCAACACACAGAATGCTGAAGATTATTTGAAAGATGTACAGAATGCAGGATCCGTATTCCTTGGCCCCTATTCTTCAGAGAGCTGTGGAGACTATGCCAGTGGTACAAACCACACCCTTCCTACGTATGGCTATGCACGCATGTACAGCGGAGTATCCACTTCATCATTCCAGAAACACATCACTGCTCAATGTGTGTCCAAGGAAGGTCTGGCCAACATTGGACCAGCAGTGGCAACACTTGCAGCTGTTGAGAAACTGGATGCTCATCGCAATGCAATATTGATAAGACAAGGACAAATCGACTACTGA

Transcript

OS493_029775-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00815	Histidinol_dh	Histidinol dehydrogenase	Family	Interproscan
PF01502	PRA-CH	Phosphoribosyl-AMP cyclohydrolase	Family	Interproscan
PF01503	PRA-PH	Phosphoribosyl-ATP pyrophosphohydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001692	Conserved_site	Histidinol dehydrogenase, conserved site	Interproscan
IPR002496	Domain	Phosphoribosyl-AMP cyclohydrolase domain	Interproscan
IPR008179	Family	Phosphoribosyl-ATP pyrophosphohydrolase	Interproscan
IPR012131	Family	Histidinol dehydrogenase	Interproscan
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016298	Family	Histidine biosynthesis trifunctional-protein	Interproscan
IPR021130	Family	Phosphoribosyl-ATP pyrophosphohydrolase-like	Interproscan
IPR038019	Homologous_superfamily	Phosphoribosyl-AMP cyclohydrolase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21256	HISTIDINOL DEHYDROGENASE HDH	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000105	Biological Process	L-histidine biosynthetic process	Interproscan
GO:0004399	Molecular Function	histidinol dehydrogenase activity	Interproscan
GO:0004635	Molecular Function	phosphoribosyl-AMP cyclohydrolase activity	Interproscan
GO:0004636	Molecular Function	phosphoribosyl-ATP diphosphatase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_029775-T1 global RNA-seq network