Gene detail

Detailed information of OS493_029548-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_029548-T1	BETA-ALANINE-ACTIVATING ENZYME	scaffold_181	190823	196147	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_029548-T1

ATGGTGACACTCAACTCCATGTTTGAGGAGACCTCTCAATGTTATGCCAAAAACATTGCTGTTACATTTAACTCTGGAATAGCCAAAGAGCACGCAACTTATGAGGAACTTGACATACAAGCTTCCAAAGTGGCCGATTTCTTAGGCACGTTATGCAAAGGACAGGAAATAATAGGGATTTATTCCAAACAGTCCATTGGCTTGGTCGCCTGTATTCTTGGAATATTGAAGTGTCAAAGTTGCTTTGCGCCTATTGATCTGAATTGGCCTCCACAGATGATCTGCAAGTTTTTGTTAAAACTGAACATCAGTCTTGTGCTTGTAGACAACACACTACTTGAGGTGTTTCAAAAGTGGAAAATACATTTACCAAGTGACTGCAAGGTTGAGCTTATTAGGAATCAAGCTCTTGATGCTAATGGCTTTTCACTTGTGAGAACGCTCTTTGAAGTCAAGGGAGATATTGTGAACATTGATTGTCTGTGTCTTGCATATGCCATGCAGACGTCAGGGACAACAGGTGAAGCCAAAGCCGTGAAAGTACCACACACATGCATAGCGTCAAACATAACTGATTTAAGGAATGTATTCCAGGTGACGTCGGATGATGTGATGTTTCTTGCGTCGCCCTACACCTTTGATCCGTTCATTGTACAGATGTTCATAACATTCAGTGCAGGAGCCAGGCTTGTCATTTTACCCGACAGTATTAAAATGGTACCTTCTAAGCTTTGTCGCGTTCTTTTTGATGAAGAAATGGTGACTATTTTACAGCCCACGCCCTCGCTGATGCATCACATAGGCCAGGATTTGATCCAAGCGAAAGTTCTCAGTAATGGTTCATCACTCAGAGTGCTTGCCTTTGGTGGAGAATCCTGCCCCACCCTCTCCACCCTCAGGCAGTGGAGACCTCCTCAGAGTAACACCTCAATGTACAATCTTTATGGAATCACAGAGGTATCATGTTGGGCTTCATGGTATCATATTCCTGATGATGCATTACTGATGGAGGGTGAAACTGGAGCTTGTCATGTAAATCTGTCATCTGAACACGAAGATCTGGAAGATTACTTGGTTGATTTGGTTAATGATGTGCCTCTTGGTTTGCCACTTTTGGACACTGTCATGGAGGTGCGAGACGAAAATGGCAAACTTGTTCAAGAAGGGATGGGACAAATCTACATAGGTGGATCAGATCGTGTGTGTCTCATTGGTGACGAAACATCTCTCGCTGCAGGCACAATACGTGCAACAGGGGACTGGGCATACGTGAAAGACCGCTGTATTTGGTTCTGTGGGCGCAGAGACCGGCAGATCAAACGAATGGGCAAGAGAATCAACCTGGATTGGATTGAACGGCAGATTACAGATAAGCTAGAGAGTGCATGCTCGCTGGTTTTAGAGAAAACAAGCAATCACTCCAGACTTCATTTATTTGTAGTTGATAAATCTTTGTCATTTAATAACAAGAAACTGACATCTCTGAAATGTGACCTGCTCAACTTGTTACCAGTTGATGCTCGGCCTGATTGTGTTCACGTGGTTTCTAATCTTCCAATGACAGCGCATGGCAAGATTGACAGAGGCTCATTATTAGCTGGTGCTCAGAAAACATCAAAGCTTGGGGACATGTCTACCAGAGAATTTCTGGAACGTACTTGGAACGAAGTCTTGGAAGTGAATGAAGCGAAAACTGCACAGAATGCATTCAGCTCCAGCAGTTCTGAGTTTGTGGGAAAACAGCCTGGAAATTTTCATGAAATAAACACAAATGATGTCAAGGCAGACAACATGTTTATTGCCAGTGGTGGGTCGTCTCTTAATGCCATAAGATTGGCGGATTTAATTGAATCATTTGTAACCAAGCGGAAGAAAACATCAGTTGATCTTTCAGAATTGTTGGACATTATTTTAAGCAAACCGTTTAACGCCCTTTGTAAGTATGTTGATAGCAGACTCACTGGAACTGACAAACGAGAGGATCTGGACGCTATGGAGATACACCCGGGACACATAGATGTAGATAGTAGTGGCAGTGATACGTTGGATGCCACTACTGACTTGCGTGACAGCACTAAAGAGCAGAGAATCACGACTTTAACATGTGAAAATCACGTGGAAGATGAAGAGAAAATGCGCGCGAATGCTCTGCCTAGCAAAATGAAAGCACAGGATAGAAAATGCATTGGTAATAACCCGAAGACAAAAGCAGACGAAGAAGAAAATGAAGACATTGTTTCCTCTTGGCAAGTGCCTATACTTCCAGTGAAGAGAAAATCGTTATCTCTGGGGGATGGCGTTTCTCTGCAAGATAAGAAAGCGGCCAGAGGGAATACAATAATCCAGTGCTCAGATCAGAATGATGATTTAAACGAAGATGAGCTGTTCGATTTGTCTGAGATGGAAAGTTGCTTTTGTTCTGTTCACAGAAGAAACCAGTCGACTGTCTGCAAGCTCTGTGAGTATTCCACACTCAATACAACCAGTCACGTGCAAAGCAAGGCACAAACATTTCCTTCCCATCAAACCTACGTACAGGCAGTGACGTCATCACTGACGGGAAAGATTCCTCACCAGGCCCTTGCTTCTCTCGAGCATGTGAAAGCTCCTGGAACTTGTGTTGCCAACCAAGAAATGAGAAACATCAACAATTCCGAGGAAAACGTTTCTATCACTTGTCAATGGCGAACTTGTTTGTACAAGTGTATCGACGCCTCGCCACTCGTGGTATACGCACCGGGGAGGTCTGAGGGTGAAGTTTTCATTGGCTCCCATGGTCACGTGTTCATGTGTATCAGTCTGAGTGACGGTAAAGTCCGGTGGGAGAGTAGGGTGGGGGACAGAATAGAATCTTCTGCAGCTCTCTCGATATGTGGCACATTTGTCATAGTAGGTTGTTATGATGGCAAAGTGTACGTATTTAACCGTTTAACTGGAGAAACATTTTGGACATTTCAAACCGATGCAGCAGTGAAAAGCTCTCCATGCGTCGACCCACAAACAGGAGTGGCCTGGGTCGGGTCACATGATCACCATCTGTACGCCCTTGACGTCACAAACAAGCAATGCATCTGCGCAATAGACTGCGGCGGTGGATCTTGTTTCAGTTCTCCTTGCATTAGTACTGAGCTGCATGTAGTATTTATTGCTACATTGACTGGTCGCCTTCTTGCTGTTGACGCTGCTGAACACACGATCCTATGGAGTCAGCAGTGTCCCAAACCAGTGTTTGCGTCACCACTATTGACTCCCACTGGTGTCGTTTGCGCATGCGTCGATGGGTTTGTTTATTGTTTTGATTTCCATGGTAACAAGCTCTGGCGGTATCAGACCCATGCTTCAGTGTTCTGTTCACCGACTTACATTGACGCTGGTTATATTGTGTTTGGCTCTCATGACAGATGCGTGTACTGTTTATCACTGAATGGCGAGCTACAGTGGAGCTTTACTACTGATGGACAAGTTTATTCAAGTCCTTTTGTTGCTGAATTGAACGCCTGTAACACAACACGTCACACAACGTGTCTTGACAAGCGTGATTCTCAGATAGCTGCAGTGTTTATTTTATCCACTGTTGGAACCCTGTATGTTCTGGACCTTTATTCTGGTGTGTTATTAGCTTCTTATTCATTACCTGGTGAAGTATTTTCTTCCCCTGTTGTAGTTGACAATCGAGTACTTATCGGCTGCAGGAATGACTACTTGTACTCGCTTGAAATATCAAGCAAACTAAAATGA

Transcript

OS493_029548-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF13360	PQQ_2	PQQ-like domain	Repeat	Interproscan
PF13570	PQQ_3	PQQ-like domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000873	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR002372	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR006162	PTM	Phosphopantetheine attachment site	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR018391	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan
IPR042099	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR045851	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR052091	Family	Beta-alanine Activation and Resistance	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44394	BETA-ALANINE-ACTIVATING ENZYME	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043041	Biological Process	amino acid activation for nonribosomal peptide biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_029548-T1 global RNA-seq network