Gene detail

Detailed information of OS493_029271-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_029271-T1	ENDOGLIN/TGF-BETA RECEPTOR TYPE III	scaffold_176	414296	460520	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_029271-T1

ATGGCACGCTGTATATCATGGTGCCTTCTTTCTCTGCTCACTATACTACAATGGATGTCGTTGGCTGAAGCATCTCATTTCAGGGCTGGCCATATAACGTGGAAGCCGGACTCCAACAACACGTTACGCTTTGTGTTCCGTCTGGCTTTTCGAAGATCGTACTCTGGCTCATATTACTGTGATGAGGATACAAAAAGTCAGGGAAGTCTTATTGGATACGGAGATTCATGGAATGCACAATGTCACAACCCCTATAATCAATTGTGTTCGAACGCCAAACACATTGCAGACACCGGCTTCCACTGTACTGACTTCAGTGTCAATGAAGACTGGTCCATGGGTGAAAATAACTTCACTGTCAGTTATTCCTCCATCGCCAGCAGTCACGTGTGGACTGTGAGTTACTCCAGCTGCTGTTGGATTTCATCTTTGGCCCGGTATGCGGACAGCAGCTGGTTGGTTTCTACGAAACTTGACCTTACTCCACGATCAGATAACGGAAAAATAAACTCATCCCCGGTATCAAGGAGCCCAGCCATATTTCGCCTTCATGAGGGTTGTAAGCAGTCTCTTAGAATCCCAGTTGAGGACCCGGATGGAGATGTGGTAAAATGTCGCTGGGCAAGTAAAATAGAGTCCAACATACCAAGCGATAGTTTTCCTCATGGCGTACTTGATGAGGAAAACTGCGTTTTGAGTTATGGAGGTCGAAGTGGAACGGCTGGCACTTATGCAGTAACGCTGACCTTGGAAGACTTCCCAGCAGGAACTACAGACTTCCAAAACGCCAGACCATTCAGTAATGTGGGGCTACAGTTTCTTGTCATAATAAGTGGCCAGTCTGGTTCTTGTGACGACAAACCCGTATTTACCGACTCCACACCTCAAGATGGCGAATGCTCTGAAGTCCAGATTGGCTCGGTATATAAAGCTGTGATTGAGCATTGCAGAGATAACCACTTCTTCCCCAATTGGAATGCAAATCACCCCTTTGAATTATGCTGGAGGGATCTTCTACAGGAATGTCACATGGAATCCAATGCAGAGTCAAGTCGGACAGCAGTTGTTCTGCTTCCAGGCGTTGGACTCGAGTGGATAAAGAAGCCTCGCACTTCTGCTTACATCAGACTCGTCCTGCAACCGTACGGTCATACCATCTACAAAGTGGATACACTCTCCCAATACGTCAATATCGACAACAATAACCGTACAGTACTGCACTTTGCCACTCCCAAGGCAGCCCTGAGTATGAATGGATCATACGCCATCTTGATTGATAACGGTGCAGTGGTAGGACAAGGTTGTTCGTATGATGGTCCACCCACACCAGGCATAAAATCCCCGGGCGACTGGGGCTTCCCTGTAGATGGTATTTGCCCTGTTGGCTTTTCTCTCGCTCCACCAGAATTTACAAACTGTGTTGACATCAATGAATGTGGTGGCCATTCAAGATCGAAACGCTCGTATTACTGGTGGTGGCAAAGCTATATTGCCCCATCATCATCATCATTAGCATACGGAGGTGCAGCTGCCAGTGCTAGTGTTCCGTCATATCTTTCAGTTGCCACTCCTACGCCAGAATCCTGCTTCTACAACTTAACAGACCCGAGTGGAAATTTTACCAGTCCATATTACCCACAGCACTATTCACACGACCTAGATTGTACCTGGATAATTAGTGTAACACCTGGCTACTACATTTATCTTCATTTTGAACATTTCCATCTGGAGGATGGTGGCAGTCACTGTCCTTATGACTACGTTCAAATATTCGATGGATACTCTTCATCCAGCTCCTTGATATTAAAACGCTGCGCTTATCAAGATGCTTGGTGTGTTTACAGCAACAGCAGCGTACTCCATGTTCGCTTTATAACGGACGGTTCAGCTTCCCACCCTGGTTTTAGCGCCTATTACGAGAGAGTCCATGAGAGAAACTCGTCCTGCACGAATGCTCCCACCACTCGTACCTGGAAGATTCTAGAAGAGGATGGGCTATTTATAAAGGATACTACCCAATGCGACAATAACCTCGCGTACAGAGATTACCAATGCGACAGTAACCTCCCGTCTGCAAACTATTCAACAAATACTACCAGTATATCACCTACACCAGCATCGACATCTCCGACAGCGTCTGCATCAATCGCGCCAGGGCCTGCTTCTGTGCCAGAATGCTTCAACCACTCGTACCTGGAAGATGCTGAAAGAAGCATGGACTTTTATAATGCGAACTATGCAACAACAAGTACCAATATTATATCACCTACATCAGCATCGACGTCTCCGACGGCGTCTGCATCAATCGCACCAGGGCCTGCTTCTGTGCCAGAATGCTTCAACCACTCGTACCTGGAAGATGCTGAAAGAAGCATGGACTTTTATAATGCCCAATCATTGCCAGCTGCTACCCCGATTCCTGGAAATAACTTTGACCACTTGAACCAACCATATGGTAACTTTACCAGTCCAAACTATCCTGGCTGCTACCCAATTAGCACGTATTGGACCTGGTTAATCGAGGCTCCTATTGGCCAGTACATACGTCTACACTTCAAATCATTTCATTTGGAAGGAAAAGCTTCCTGTCCGTGGGACTACGTCGAAATATTCGATGGGAACTCATTATCTAGTTCCCGAATGATAAAGGCGTGCGGCCAAATGGCACCATGGGAGCTGTTTAGCAGTGGAAGGTTTCTCTTTGTACGGTTCTATTCAGATGCGATTGTCAGGAGGCCTGGATTTTTTGCTACTTATCAGAGAGTGTCATACAGACATAGCGTTGCATTGCCAACCCAAGTTTCAAGTACAAGTGCAGTACAGTGCCATGCTACCCACACAGCAACTGCCACGGCCACTGCGGTGAATGGAATCCATCCGACACCTTCTTCAGGAATGCATTCAAGTTTCTATGCAGCTTCAAGTGTTAATGTCCTGCCCGATCCTTCTCAGTTTGAGCTGCATTTACCGTCAGACTGCGACCAAATCTGTAGCAACACTATAGGAAGCTATACGTGTTCTTGCATCAGTGGATATCAACTGGCCCTTGATGGGAAATCTTGCTCAGATATTGACGAATGTTCTTCCAACAATGGTGGCTGCAGTCATCATTGCTTCAATATCCCTGGATCATTTTACTGTGATTGTCCGGAGGGAATAACTATGGGAGCTAACAATTTGACCTGTGTTGAACCTGGTGTGTCCGTTGACTGTGGTGACAGCCGCATGACGGTATCGTTAGAAAAAAAGACCTTCCCATTCTTTGACGTTGCCCAGCTACACTTGCGTTATGCTTCATGTAAAGCCACAGAGAACGACACACATCTGCTTATCAGCACTGATCTAAATGGCTGCGGGACATTGGTGAACGAGACCCAAGACGCTCTTATTTTCTGGAATGAAATCCGAGCGGATGCAGTGATCATCGACTTTGTCATCACTCGAACACATGATATCAGACTTCCATTTTACTGCAGCTATTCCAGAAAGAAATTAATAAGTTTGAGTTTCACTCCTCGACGGATTCACTTTGGACAAGAAGTGGGATATGGTAACTTCACCTTCAGCATGGAATTTTACAAGAGTTCATCATACGCCACGCCCTACGCCCTACAGGACTACCCACTGGAGGTGCAACTCGATGATTATCTGTATGTGCAGTACAGCGTGGAGTCCAGTGCTGACCTGGTGATAATGGCCGAGAACTGTAAAGCCACTAAAGGAAATTCTCATTCTTGGCCACAATACAACATTATACAGAATGGATGTCCGCGAGATACAACGTTGGATTACAGCTACGATCCGACGCGAAAGTTCCAACAATTTAAAATCAAAACATTCAGATTTTTCAATGACTACGATACGGTGTACTTTCATTGTGAGTTGCTGGCCTGCCACAGATACTCGCCTAATTCCAGGTGCGAAAAGAGTTGTTTAAACGGTAACAAGAGAAAGAAAAGAGAGGTGACACGTGACGAGGTTGAGCATGACGAAAGTACAACCAAGATCACTCTGACACAAGGCCCAGTGGTGATAAAAGAAACAGGACAATCTGGAGGCAAGTTCAAAACGTTCTTTTGCTGCATATTTCATAGTGCACAATTCATTCCTGAACATACAGATCAAAGCAAACAAACAGCTCTGATTGGTGGTGTAGCTGGCGCTAGTGCATTTGGTCTGATTGCCGCCATAGCCTTGGCTGTTCTATTTGTCAAGTACCGCATTGCACGGCGGTTAATGAACAGGAACAAGGTTGGGGACCTGTACACTACTCAAGACGAGCAAATGAGCAGAAGAAACGCTTACATCCAGGAAGATGACATGATTGAAAATGAAGATGCCTTGTAG

Transcript

OS493_029271-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00100	Zona_pellucida	Zona pellucida-like domain	Family	Interproscan
PF00431	CUB	CUB domain	Domain	Interproscan
PF12662	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR001507	Domain	Zona pellucida domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR026823	Domain	Complement Clr-like EGF domain	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR042235	Homologous_superfamily	Zona pellucida, ZP-C domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14002	ENDOGLIN/TGF-BETA RECEPTOR TYPE III	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_029271-T1 global RNA-seq network