Gene detail

Detailed information of OS493_028774-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_028774-T1	GUANINE NUCLEOTIDE EXCHANGE FACTOR	scaffold_169	39073	71637	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_028774-T1

ATGGTGGCCGAATGGATTTCTTGTCTAGAAAAGAGACCTGCAAACAGAACAGGAGAAGATCTGGATATCATTTATGCCAGACTCAAGGACCTGAAAGCATTCGAGCGCTTTCACTGCACAGTTCTTCAGCAGATTTGTTATTACGGATATTATCAGGACTTGGAAGAGGGAATCACATTGTTTCGTCAGGGTGACATTGGCTATTACTGGTACGCTGTGATAACCGGCTCTCTTGATGTTAGTGTGTCAGAAACGGGAAAATTTGAGGATGCTAAAACCATCTGCAGTCTGGGGCCTGGGAAGGTATTTGGCGAGTCAATACTGGATGATACACCAAGGTACATTGCACGCCACAGTAACTACGAACGAATTTTGCGAGCTGCTACTAGTGGAGAAGAAACATTTTCGTACTATCTGGGAGCGGAACAAGCAGTATCTCGTGGATATTATAGCCACTCCTTCGTCTTCTTTTCTAGAGCACAAGAAAAGAATGGAGAATCTCTTGACGCTAATACCTCAGAGGAACACCACACTATGATATGGGTAATGACTGTGAATTCAAAGACCAGGACATCCTTTACCGGTTTTGTTGTTGACGAGAAGCAAGGTGAGAGGCCTGGCGAGGAGCCATACAGTGAAGAGGATCTCGATGATGTTCTGCTCATGCTCAGTAGGTCTGGACCTGATGCTCAGCTCAGAATGGCGCTTAGAAAATCGTTTAAAAAAGAACTCGCTTCCGCTTTTGTGTTTGAATCCCATGACAGAAAAGGAACAGTGCTTTTTAACGAAGGAGAAGAAGGAATCTCGTGGTACATTATATTGAAGGGCTCCGTGAATGTCGTGGTACATGGAAAGGGCGTGGTCTGCCAGCTGAAAGAAGGAGATGATTTTGGAAAACTAGCTCTTGTCAATAATGCCCTCAGGACGTTGAAACAAACACAGTTCGTCTTAAAGAACAACGGCCAAGACGTACTTGTCTTAGAAAAGATGAACATACGCAACATATTTGGAGCCGAAGACGAAAACCAAGCTCCGCAGATGCAGAAATACTCTGTTATGGCTGGTACTCCTGAAAAAATGGTGGAATATCTTCTGGAAACGAGAATGGACAACACAAATAACTTTGACGAACGAATTCTTTTTATCATTGGACTAGATGAGAACAGAAATATCACAACTGAACACAAAGTGGCTATCAAGAGAAGGATCGTCCAAATGACGCTTCGTTGGTGTTATTTGGCCGGAAATCTATTTTTGGAAGATAAAAGCATTTGCAGTTTTATTGAGGAATTGATGAAATCTTTGGAGGCGGACCATCTCATTAACGAGTTCAACTTACTAAGAACAGCAATATTCAAGCTTCATGAAAGATTTCCTATGGAAGAAATGCCAGATGGTTCTTTGTCCACTCAAAAGGGCCGTCTTCCGCTTCGTCGCATGGGTGTCGCTAACATCACAAGGGGCTTATCAGAGTACAAATCAATACGAGGAATCGATCAAAAGCGCGTCCCATTCAAACCGCACAAAACTTGTGTCACGACTGGTTTAAGCGTGAACGGAAGACTGTTCATCGCTCCACGAGAACACTTGGACTCACTGACTCCCACTCCTGAGCAGGAAGGACCAACAAGCAGCAATATTACCTTCCTGGAGTCAGTGGGATCCAAAGAGCTTGCGTATTACATTTCACAGTACGACTACGAGCTGTTTAATGCCGTGAATATTCACGAATTTATTTTCAATATTTTTGGGAAAGAGAACTACAATCAGATCACAGCGAACCTTGATCTGCTCCTCAAAAGGTTCAATGAGGTACAGTTGTGGGTCGAAACACAGATTCTCCTAACTCAACAACTCAACAAGCGAGTGTATTTGTTGAAAAAGTTTATTAAACTGGCCGCGCATTGTAAGGAATACAAGAACTGGTATTCGTTCTTCGCTATTGTCATGGGACTCAACAGTGTTGCAGTCAGCCGCTTGTCACAAACATGGGAGAAATTACCAAGCAAGTTCCGAAAAATATATGAAGAGTTTGAAACTACTTTGGAGCCATCTAGAAACCATCGCGTCTACAGGCTTTTAGCTGGAAAAATGAAACCTCCTATGTTGCCTTTTATGCCGCTACTGATGAAAGACATGACATTTACTAATGTAGGGAACAAAACACAATTTGACGATCTGGTGAATTTTGAGAAAATGAGAATGATTTCCTCCACAATTCGACTGATCCAATACTGCCGCAGTGAGCCTTTCAATCGCATCCGCTATGAGTCACGTGATTTGTGTAGGGTTCCTGTGCGTGGTTTTATCATTGGTGTTCCTGGGAACTCTGAAGGTGATAGCAGCATCCAGAAAGAAACACAAACCTCAGATGGATCTCTTCTGAAAGGCATCTTGGGCGGCAGGAATAAAAGGCAGTTGCGGGAGCTTTGTGACCAGTCTTACGTGGGCTGCATCATTCAGGATTTCACTGCAGGGAACAAGAAGCAAAAGAAAAGGAGGAAGAAAAGAAAGAACAGATACAGAGAGAAGAACAACAAAAGGAAGATGGAAAAACCAAAAACAGAGCCGACACAAACATGCCCTCACTTCGTGGATGCTCCGACCGACGATGGAGATGATGTAGAGGACGATGGCGAGCAGTGTCCTCAAGCTCAACAGCATAAAATAAATCAAGATGATCGCCTGGAATAA

Transcript

OS493_028774-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_028774-T1 global RNA-seq network