Gene detail

Detailed information of OS493_027700-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_027700-T1	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	scaffold_153	85890	107301	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_027700-T1

ATGCATGGACGAGTTGGGGGCTCGGGTGGCGTGAAACCGCCTGACGGAATCGGCGCTATTCGAGCTGTCAACTTTATTTCTTTGAGTCTGAATGTTTACACGATTCTGTGGCTGTTTGTGGTCAGTGTTCAAGCATCTTCTCAAGCTGTAACCGTTTTTGAGGGTGGTAATATTACCCTGAACTGCACTTTAAGTGGTCCTAACATAAGTTGGACAGGAATTAGAGGAGAATATATTCAGACTGGTTCCAGGATTTTGTCAAAGCAACGTATCACCCGAAATGAGAGTGGAAGTTACAAGTGTCAAAACTCCAATAGAACAGAACTGCTTTTTAATCTGACTGTTGAGTATGGTGCTGAAGGAACTATTAAGAGTAACGTCACAAAGTTCCACCTTGGTGAAGTGATTAAGATTTCTTGTGAGGTTGATGGTGTACCAGCAGTCTCTGAAGTAGCTTGGTTTTTTAATAATACTTTTATATGCTGCGTGCCAGGAAATAGTTCACAGCTGACGTATAAAAATGCCAGCTGTGATGATGAAGGCAAATATATTTGCCGTCCTAAGAATAACGTATCCAATTCACGGAACGGAACTACAATGGTCCAGGTCGAGGGTTGCCCATTGCCTGTTCCATCAGTTAGCAGTACTACACACGTATATGTACCTAGTGTGACTGCTTCTACTTCTCCTACTTCTTCTAAATCATTTGTATTGCCCTTTCTGCTTACTGGTTTCATTGTAATTCTACTTGTTGCTGCTGCAGTTGGAGGCTATCTTTATCTCAGACGAAGGAGACACTGCTGTTGCTGCTCTATGTACTGTAATGGATTCTTTAGTGTCCAGAATGAACCAAGTCCTCCCTCACCATCCAAGCGAAGGCCAAGTCTTATCCAGTATTCAAAATTCAAGCATGGACCAATTCAAGTGGATAGCTTTGCAGCTTACGTTAAATCCATGCATACCGATGGTGACTACAGATTCAACCAGGAATTTGAAGCATTAAAAAGTGTTCATGTTAAAAGCAAGGCATGGATACACAGTGAAAAAGCTGAAAACCAATCCAAAAATAGATATGGAAATGTTGTAGCTTATGATCATTCAAGAGTGATTCTGTCTCCAACGGAAAATGAACCAGATTCTCATTATATTAACGCAAACTATGTTGATAGCTTCAAGAAAGTGAATGCTTATATAGCCACCCAAGGACCCATGGCTAACACTATAAACGATTTTTGGAGGATGGTCTGGGAACAGAACTGTAGAGTCGTTGTTATGATCACAAACATCATAGAAAAAGGAAGGCATAAGTGTGCAATGTATTGGCCGTCTAGACAGGCCAAGAGTGAAGTGCATGGCCCTCTAAGAATAACATACTTAGACGAGGAGGCTTTAGCTCATTACACTGTGCGCAGATTTGAAGTAAAACCAGTGGAGCACAGCAGTCATTACAGTCAGGATTTAACAGAAGATGAAGTGAAGCCGATGATAGTGTGTCAGTACCATTTCACTGGCTGGCCAGATCATGGTGCTCCAGACATTGGCTGTGAGTATCCTGCACTTGACTTCATTTCCAAGTCAGCGGCGGCCAGTCAAGATGGTGCAGGTCCCATTATTGTCCACTGCAGTGCGGGTGTTGGTCGAAGTGGAGCATACATTGTCATTCACAGCATGGTGAAACGAATACACGAGACCGGTGATGTAAACGTTTTTGACTTTGTCGCTCAGATACGTCAACAAAGAAATCATCTTGTACAGGAAGAGTGCCAGTACATATTTGTTCATGATGCGTTACAGCACTTTATTGACAGTGGCTTCAAGCTGTCCATACCAGCAGAGGACCTTAAAGACTACACACACAAGCTGAGGAAGAATCTCTCAAGTCAGAGCAAACTTGAATTAGAATTTGAGGACTTGATTGCAGTTCAAGTGAAACACTACAACTTAAAGCAAGCTAAACGTGGCTGCAACATAGCAAAAAATCGATCAGTAGATTATATCCCAGCTGACAGTGCCAGAGTTGAGCTGTATCTTCGTCCAAAAGAGGAGGGTTCAGATTACATCAATGCAAGTTACCTTGCGGGATTCTGGAAGTGCCAAGCTTACATAGCCACCCAGTATCCTTTAGAAGACACTACCCAAGACTTTTGGAGGATGGTTTGGCAGGAAAACTGTCGCTCACTCATCATGTTGCTTAGCAAAGAAGAGCTGGAACAGAATTATTATCATAGTTATTTACCGCCTGCATACGAAACATGCAGGTTTGGTGATTATGAAGTGACGGTAGATTCTGAGGCAACTCGTGGTGATATTGTGGTCAGAGAGCTCAGAGTGGTCTTTATAAAGGACCCAAGTGAGTACAGGAATGTACGTCATTTTCATTTTCTTCACTGGCCTGAAGATGGCAATCCATGGTCTGGTCAAACCATCCTTCAGCTCATCTGTAAAGTGGACAGCTGGGAGAAGGAAGTGCGGGTCCATGCCAAGCCATTTGAGCAGATTGGTCCAATTGTAGTGCATTGCAATTATGGAGTGGGGCGTACAGGTGTTTACTGTCTGCTGCACACAATGTTCCATCAGATAACACGCGATAGAAGTGTTTCAATCTATCAAATAGCTCGCCTGTACAATCACCAGAGACCACACTCTATATTAAACAAGGACCAATATGAGTTCTGTTATGATACATTGGTGGAATATATTGAAGCAGACTGCTCGTTACATCTTGTGTGA

Transcript

OS493_027700-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_027700-T1 global RNA-seq network