Gene detail

Detailed information of OS493_026950-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_026950-T1	3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED	scaffold_142	651195	699177	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_026950-T1

ATGGAAATGGAAGCACCCAAAAAAGGATGGATGCAAAGAGCGAAGATCAAGGTTAAGAAAATTAGAGGTCGTGGAATACGAAGGTATCCAGCACATGATGAAAGAAATGGAGGACATGAGACCCGTGAAAATCCAAATCCAGTCGCACCCATTTCAGCAATGCGTAATGGAATTTCTCTTACCAATGAACCACCCAACACAGCCAATCCTGGCAGTGACAGTACTGTTTATCTACCCAAGCCACAAGAGGATGAGGGTGCAAGCCCCTCTAAAGAACCACCTAACAGCCAGGATTGTGGCAATACTGTTGATCTACCCAAGCCACAGCAGGCTGAGGGTGCAAGCCCCTCTAAAGAAGTCTGCCCAGCAAGTGTAGGATGCCCATACAATGCTGATCAAACATTTACAACCAAAAACATTTTTGGAAGAAACTATAAGTTGTTTGCTGACAAACTGGGATATAGCTATCAGGACATCCAGTATCTTGAAAGTAAGGACAAACCTGTACAACAAATCATTGAGGAAAAAGGAGACAGAACAATTGCTGAATGGATATCACTGTTAAAAGATATGGAAAGAAAGGATGTGGCAGAGGATCTTGAGAAATTCATAGAGAAAACCCCTACTCCAAGGCAGTTAAAACTGCGAAAAAAGTTACGTGAAAAGAATAAGGAACGGAAGACCTGTCGGGAATCTTACGATGCATTTATTTGCTTTGGCAATGAAGATAGAAAGTTTGTGGACAAAGTGTTAAAAAAATTGGAGAGTGCACCTTACAATCTTCACTTTTGTTCAAGTGAACGGGACTTCCTTCCAGGTGGCTCCGTTTTTGAAACAACTGCTGTGGCCATTGAGAAAACATGTAAAAAGTTTGTGGTTATCTTGTCAAGTAATTTTGATCACAGCGAAGGAGCTCACTATGAGTCACAGATTGCCACAGGTCTTTCACCAGGGGCCAAAGAGAAACGTCTTATCCCAGTTCTTATTGAAGAGGCTTATAGATCTAAGATTCCACGCACTATTTCTCATATCACATATCTTGATTACCTTCGACAAGATGAGAAACACTTCTGGGACTTACTAGCGCAGTCACTGGGATGGAGCGCAAAGTCGTCATCTGTTGGTTGCCGACGGCTTAGAACCTTATGCAGACATCTGAGGATGTCATCCACCAGTGCAGAAACGGATGCTGAGGTATTACTTGAAATCAAAAACAAAGTTGGTGTGATCACACTGAATCGTCCAAAGGCATTGAATGCTCTGAATTTAAACATGATCAGACAAATGTATCCAGTGTTACAGAAATGGGACGTTGATCCAGCTGTGAGCTTAGTTCTGATTAAAGGAACAGGAGATCGTGCCTTTTGTGCAGGCGGCGACGTCAGAGCAATTGCAGAAGCTGGAAAAAAGGGTGACAGCCTTACTAAGGTGTTCTTCAAAGAGGAATACATGTTAAATTATGCCATAGGAACACTGCAAACTCCTTATGTGGCATTTATAAATGGAATTACAATGGGAGGAGGTGTTGGTTTATCTGTCCATGGCCGATTCCGAGTTGCCACAGAGCGCACAGTATTTGCTATGCCAGAAACAGCTATAGGTCTCTTTCCTGATGTTGGTGGTGGTTATGCGTTACCCAGAATGAAAGGAAAGTTAGGTCTTTACCTTGCTTTAACAGGTCACAGGTTAAAAGGTTATGATGTTAAACATGCTGGAGTTGCAACACACTTTGTCACCAGTGAAAAGCTAACAGACTTGGAGTCATCATTACTCAACCTTACTGATCCACAATTGAACAGTGTACAAGATGTCTTGGATGGCTATGACAAAACGGAGGATAATGATTTTTATGAAGGAATAAGAGCTGTGTTAGTGGACAAGGATAACAGCCCTAAGTGGAAGCCAAGTACTCTAGATGGCGTGTCGAAGGAAAAAGTGGATAGCTACTTTGAAACTCCAGAGACAGAGAGCTTGTTCTTTGACATAACATCAATCAACTGGGGTGAAAGACAAAGGTTTTGA

Transcript

OS493_026950-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan
PF16113	ECH_2	Enoyl-CoA hydratase/isomerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR032259	Family	Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR045004	Domain	Enoyl-CoA hydratase/isomerase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43176	3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003860	Molecular Function	3-hydroxyisobutyryl-CoA hydrolase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006574	Biological Process	valine catabolic process	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_026950-T1 global RNA-seq network