Gene detail

Detailed information of OS493_026665-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_026665-T1	HYR DOMAIN-CONTAINING PROTEIN	scaffold_139	172784	185725	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_026665-T1

ATGCGGTCTTTAGGAGTTTTTACCATCGGGACATTTTTTCTAGCTCTCGTATCCCTCGGTGTTAAACCGACATCGGGGATTGAGGGGAAGCTAGAGCTGCAGAATTTCCAGAGATCACACAACGACTCGATATCAGATCTTATATTTCTGTTGGATTCCTCTGGCAGCTTGTGGTACTATGACCCCGTCAGCCATAAATCAAAAATTGGCTTCGACGATGAAAAAGCGTTCGTGAACTCTTTGCTGAGCTTTATTCGTATCAGCATGCCGGCAACTCGAGTCTCGGTTGCTGTATTTGGTACTGACGCTACCCTTGATATCAACTACGTCAGCAATCCGAACGTACAGAATCACAAGTGTAACTTTAAAAAGAGCTTTGGGGGTTTGAAGTTTCGCTCTGGACTCACCAATATGCACGATGCATTCCAATACGCTTATGACATTATCTTTGGAACGTTGAGCGGTGGCAAGCGACCAAACAAGTTAGCCAAAACAGCCGTGTTTGTGCTGACGGACGGGATGTGGAACAGAGGAGGAGATCCTTACCCCATTGCAAAACAACTGAAAGATGAAGATATCGAGATATTTTCTATCGGGGTGACGAATGGTGTCAACATGGGCGTGATGCGGCAACTTGCTACAGACAACAGCCATGCGTTTCATTACAACGATTTTACACAGTTCAGGGAGCTAGCGAATTATCTGAGAGGAGATCCGTACGAGAGAGACTGGGAACTTGGTCAGCCAAAAAGTCTTTGTGGTTCATGTGACAATATGGCAGAATGCGCATGCGGTCTTCTAAGCGGAGAATATAAGTGTTCCTGCCCGAAAGGCTATTATGGGAGCGGTTATATCAGCGACTGTCACGAGTGCCCTATTTCTACCTACAAAGACTTCACTGGCTACGCTAAATCCTGTATTCCATGCCCTGCCAACTCACGGCATAGTAGAAAAGGCAGCATCAGCAGAGGGGACTGCAAGTGCCTGGAGGGATATGAGGGCAATCCTGCTGGATATGTCGAGTGTACAATAAGAAGTTGTGACCAGTTTCCAGTCCCCCCGCACGGTATACTCAAGGGCGGCACATGCAACCGAGAGTACCAGTCCACTTGTGAATTAATTTGTGTAACGGGATACGAACTGAGTGGGAATGGACGAAGGACTTGCGTAATCAATGATCTGGGAATAGCTGCGTGGAGTGGAAGTGATGTACAGTGTAATAAAATTGTGTGTCCACTGATTGAAGTCACGAACGCAAATCCTCCCACTGGCACGTGTACAAAGCCGGATTTATCATATCTGACCACGTGTACATTCAAGTGCTGGTCAGGATACATTCTACAAGGAAACCCTGTGCGACAGTGTCAACAGGATAAGACTTGGTCGGGAACAATCAACACTTGTGAACCGGTGATGTGTCCAAAGCTGAACTCGATCTCTCTCAGTCAAGTAACTCCACCTGAATGCGTTACCCAAGAATCACGATTTGACACACGCTGTGTGTTCGAGTGTCCAAAAGGCTACTTATTCAAGGGCACAATAGACAAATCTACCTTGAGATTCTGTCAGAAAGACGGTACTTGGACTGGAGAACACAAGCCTTGTGCAGACAGTGAACCACCCGTCATAACATGTCCCAAGAACATAAGAGCCAACAACAGCCTTCACCAGCCTCACGCAGTGATTACATGGGTCGAGCCTGCACACAGTGATAACTCAATTGGCATAGATCCGCTGGCCGAAGTGACCGTTACTAGCTCCTACAAGTCAGGACAGAAGTTTTTGATTGGCACGTATACTGTGCAGTACACAGTGATGGACAAAGCCGGATTAACAGACAGATGTTCCTTTACAGTGGAGGTGATAGATAATGAAGCACCGTACTACACTTCATGTCCTCAAGACATCCTGGTCGAAGTAACACAATCATCGGCACGAGTCAACTGGGATAGGCCTGAATTCCTGGACAATTCCAACAAGACACCAATTGTTACATCTAACAAGAGTCCTGGAGAAACGTTCTACATTGGGGAGGTTTTCGTTAACTATGTGTCAAATGACCAGTCTGGCAATGTCAACGACAGCTGTGCTTTCAAAGTGCACCTAAAAGCCAAGGCATGTCCGTCGTACGCACCTCCAATTAATGGGGCATTAGCTTGCTACGCGACTGGTGGGAGCAATAAAGTCTGTTCAGTCAGCTGTAATGAGAAATTCGACTTCGCATTTTCACCTGCTTTTAGCTATATATGTGCTACGGGAACGTGGGGCGCGATACCACCCTCTCCAAGACCCATGCCATGGCCAGACTGTTCTGTTCGTTACACACCTGGCATGGCTCGTATGGCCATGATTCCACAGTTCTTCTATTACTCCGGCGACTGTAACAGCAAAGAAGCACAGGACCAAATCAAACAGAACTTCATCGATTTGCTGAACCAGGCATTTCTTCCAGGGGATATCTGCAGAAATGACGCCGACTGCAATATTGGTAATGTCGTTGTTTACTGTGGTGCAACTGACGCGGCTAAGCGTCGTCGACGAAGATCTGTTCGTGAGGTGTCCATCAAAGTTGACTACGTAGCACAGGAGAAACCAAGTGCTGGCTCACAAAGACCACAAACTGTATCACAACTGGAACAAATGTTGGACAACGACGCAAGACCTCTACTGGATGCACAGGCAAAGGCTATTGATTGGAGTCCTTTACGTTCGTCAACTGATCTGGAATATGATTCGTATAGTATCACTACTGCTGAAGCGTACTGTTCGGACGCTGGGGCAGTTGTGGGCAAGTGCGATTCACTAGAGACCGACTGTGATGGACTTAGTAAGCCACATAGCTTGTGCCAATGTAACCAGGCTTCAGGATCAATTGAAAAGTGCATCCGCTGTCCAGCCGGAACGTACTATGACTCATTACAAGAGAAATGTATCAGGTGTTCGCCGGGAACCTATCAGAACCAAGAAGGAAGATTTGAATGTTACGACTGCCCCGAGGGAACATGGACTCTTGGAGACGATTCCAAGAACTTTACATCTTGCAGAGCAAAGTGTATCCCAGGCTATGTTTCTCCTTCTGGACTCGCCAAGTGCTACCCTTGTTCAAACGGGACTTACGCGTCTGGTCTGATGAACACAAACTGTACTACCTGTCCAGTGGGTACAACAACTATACTCCCGGCAGCTGGCGGAAGAGAAGAATGCGGAATGAAATGTGCCCCTGGTACATATTCAGGCAATGGTGTAGAGCCCTGTATTCCGTGTGCTAAGGGCTCATATCAGGTGGCGATAGGGGCCTTAGCATGTATAGAATGTACTGCTCAAAAGTCAACTTATGGACCTGGTGCTGACGCTGCAGATATGTGTGTTGGTAAGATGGATCAGCTTGATCGAGCAGTGTTTAGTGCGTCTCGCATGCGGCACTGTCGGGAATATGAACAACTCTTTCTCAATTTTTCACTAAACTGTATTTAA

Transcript

OS493_026665-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF02494	HYR	HYR domain	Domain	Interproscan
PF07699	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR003410	Domain	HYR domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011641	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR043555	Family	Sushi repeat-containing protein SRPX-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46343	HYR DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_026665-T1 global RNA-seq network