Gene detail

Detailed information of OS493_026181-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_026181-T1	AAA-FAMILY ATPASE	scaffold_133	796229	806953	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_026181-T1

ATGAATCGGGTCAGATCAGCTTGTGTAAAGACAAACTCATCGAAAACCTGCTTTGTTAGTCTTTCTGAAGACCTCGCAGAGGCGATAGGACTACGAATTCAGGGTCAACCTTTTGCTCTTCAACTGCAGTGGTCAGATAGCAAGGCCTTTACCAGCTGGTCTGGTGAGGTCATACGCAGCAAGAAACATGATCCCTTAAATGGTTCATCATCTGTTATCCAACTTGGAAAAAGTATAGTGGAACCCGTCATTAGCATCACATCATGCAACAGAATAAGTGTGGATCCAGTTAGTGCCAATGATTGGGAGATATTGGAACTTCATGCTGGTTACATTGAGAGCCAGCTTCTCAATCAAGTGAGGGTGGTGTTCCCTGGCCAGTTACTGCCAATTTGGATTCAAAACAACATGTGCGTTCTTGTCCAAATTGTTAATCTTGAGCCTAATGCCAATTGTGTGAGGCTAGATGAGTTTACTGAAGTGGTTGTATCGCCAAAGGCAAGAACTTTTCCTCAACCAAAAAAAGACCAACAGGTGTCAGTTCTTACCGGTAAGGATATAACACCACAAGACAGCAGTCAAGCTCATGGTCTAGATACTGAACAAGAGCATGCAGCGACAAGTACGGCTTCTGTGTCTTATTTTGAGGATAGTGACAGTCAGTTGTTAACTGCGGGAACTCGTTCTTGTACCACAGATTCAGGAGACAAAGATTATTTTGTCAAAGGTGGCTTTATGTCAAGCTTTACTGGTTATCTACACACGTTATTATATCCTGATGGTGAAGAAAATCCTGTAAGTGAAAATCAGACTTCTAAATCTTTGATGCAGAAAGGAAGCAGTACACCAACTACTACTTCTACACAAAGTACTCAAAAATGTAATGGTAACATTCCCAAAGAAGCCGACTTTGATATGTGCATAAGAGTACAACCAGAGCTCACAATGAACAGCAACAAGTCAATTGTTCTGAAGTCATGGATTGGTAATTTGACAACATTTCCACCGCCAGATGGTACAATTGTAAAAACTGTTCAAATAAGTAGGTTGTTATCTCCAAAAGAGAGGGCTGCATCTCGAACAAATAGTGCATCAACAAACAGCCGTGACAACGTGGGATCAACATCGCGGGATTCTACAAACCAAGAATCTGATTCATCAAACAGAGGTATTCAAGATGCGACTGATCAGTCATCCTCTGATTCAGCCTCTGCTGGTGTACCTTCACGTCACTGGATTGTAAGGATGGTGATGACAAGCAGTATAAATAGCACCTATGTCAAACAAAAATCATGTGTATTGGGCGTGGCAGAGCATGTGTTACCAGGCCATGTGGTTATGTCCAAAGAACTGTTGCAACTCCTTGGTACAAGAGATTTATCTTTAGTTAAAATTCAGAATATCTGTTATGGACCGTCAGACATCCAAGGTGTTATCTTACATCCCTTTGGAGATACTGAACAGAAGCTTCAGGATGTTTCAGCTGAGTCAGCATTAGAAGCCTTCGAAGGGTGGATCTGTTCTGTCTGTAGCCTGGAGGCACCACTTGTACTCTGTAGTGGAATGCTGGTGTCCTTTGACATCTCTCAAGGCCATCCTCTTCAGTTTGTGGTTACAGTACTGAGCCATCACGAGACCTCCAGCTCAACGGACAAGATTCCATATTATCACTTAACCCCTGAGACCTTTGATAATGTGACAGTTGTTATAGGAACACCCCGTAACTCAGTGAATGGTTCAGAAGAATTAGTGAACGCTCAAGAAAGCAAGCCACAACATCCGAAGCATAGCATCACAGACTTGGGAGGTGTAACAGATGCTTTTCACAAATGCCTGGATCATGCCTTATCAGCCCTAGGGCAGAGACCACTATCCAATCATCTTGGAGGTAACATCATTACAGGGTTGTGCAGTGGGGCTCTGCTAATTTGTGGCAGTGGAAAAAGAGTTGATGCCATTCAAAAACAGTGGCAACAGATATTTGTTGAAGCAGCGTGGCATCAACCATCTGTTATCCTGTTTGATGACTTAGATCAAGTTGTTTCAGCTCCAAGTGCCCTCCAAGAAATGGGAGGCGAAGCTTTGTACAAACGCCGACTAGCCCAGGTATTCAAAGAACTTATCGCCACAGAGATCAACAACAATAGCAAAGTAGTTGTCATAGCAACCAGCAAGTCACGTGACTCATTGCACCCCTCACTTCTGACATCAAGAGGATGTCACGTCTTTCAGTGCTGTGCGGAGCTTCATCCACCCGACAATGACCAAAGGAAACAGATCTTATGTGCAATGGTAAACAAGAGGTTTCATTTGCAAGATCATGAGAGTTTAGAACTCAGTTTATTGGCAAAGAAACGAGGGATTCTCACCAAAAGATCTCCGATCACTGCTTGA

Transcript

OS493_026181-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF09262	PEX-1N	Peroxisome biogenesis factor 1, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR015342	Domain	Peroxisomal ATPase PEX1, N-terminal C-lobe	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029067	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR050168	Family	AAA ATPase domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0005778	Cellular Component	peroxisomal membrane	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007031	Biological Process	peroxisome organization	Interproscan
GO:0016558	Biological Process	protein import into peroxisome matrix	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_026181-T1 global RNA-seq network