Detailed information of OS493_024626-T1 in Lophelia pertusa Gene info
Gene IDAnnotationScaffoldStartEndStrand
OS493_024626-T1DICER-RELATEDscaffold_116275496287129+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF02170PAZPAZ domainDomainInterproscan
PF03368Dicer_dimerDicer dimerisation domainDomainInterproscan
PF04851ResIIIType III restriction enzyme, res subunitFamilyInterproscan
PF20930Dicer_PBDDicer, partner-binding domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR003100DomainPAZ domainInterproscan
IPR005034DomainDicer dimerisation domainInterproscan
IPR006935DomainHelicase/UvrB, N-terminalInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036085Homologous_superfamilyPAZ domain superfamilyInterproscan
IPR038248Homologous_superfamilyDicer dimerisation domain superfamilyInterproscan
IPR048513DomainDicer, partner-binding domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR14950DICER-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004525Molecular Functionribonuclease III activityInterproscan
GO:0004530Molecular Functiondeoxyribonuclease I activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006309Biological Processapoptotic DNA fragmentationInterproscan
GO:0016442Cellular ComponentRISC complexInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0016891Molecular FunctionRNA endonuclease activity, producing 5'-phosphomonoestersInterproscan
GO:0030422Biological ProcesssiRNA processingInterproscan
GO:0031054Biological Processpre-miRNA processingInterproscan
GO:0090501Biological Processobsolete RNA phosphodiester bond hydrolysisInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for OS493_024626-T1 global RNA-seq network
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