Gene detail

Detailed information of OS493_024102-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_024102-T1	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN	scaffold_110	1073683	1085180	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_024102-T1

ATGAATACTACATTTCAGGAAGCCATTGCCAAGTTGCCACTTGTAGTGCTAATCAGCGCAACGATTACTTCTGGAATCACAAAGAAAATTGTTGTAAAAATTGGTAGCAAGTGGTCCTTCATCTTGGCTTGCCTTCCCGTAATTGGAGCTGCCTTGTTGAGTTATTTTATTTCCCAGTCCACCAGATCGTTAATCTACCTGGCCGCTGTCTTGCTGGGATTTGGATTATCTGCCACGTTTATTAATGCACTTAGCTTCGCAGTACAACTTGTTGGAGACAACAAAAGCACCTCTGGTTTCGTGTTTGCTTTCATTAACCTGATGGGAAATCTAACTTCCGGCTCCTTGATCAGCGCCATACAGAAATTATTTCCCAGTGGGTCTGAGGACTGTAAGGTGTGTGAGGATTATGTACGACTTGTGTTCTCAGTCGTTCCAGGCTCACTTGCTGCAATCAGTTTGGTGATTGTTTTGGTGTTCCAAAGTTCACAGACAACACGCGAGCGAAATGCTTCCCAAACAGATGGCAGAGTGAGGAGTGAAATAGCGATAGAGCCTACTGCTAGTAGTGATGAAGAACCGAGTGCCCATAAAGGCAGAAAACTTAATACGCCTACGAAAACTTTATTAGAGCCAGCAAGTAAAAGGTTACGCAGTACAACTACAAAACAAAAATTAAGCGGCCGTTTCTGCCAGGAAAGAAATGATAGCTTTCAATCTGCCCTCAAAGAGAACTTTATAGAAAGTCCCGGAAAGCAAGCTAGTCAGGAATCAGTTCTCAGTGTTCTTAATTTAGATGAAAGTGACAGAGGGCTTGCCACACGTGCCGTTAACAAAGCATTTCCTTCCGCAACAGTAAACAGGAGGAAAGGAACTTATAGTAATGTACGAAAGGCAGTTTCTTTTGGAACTAACGCAGAAAAATCGGATACACCAACTCTAGATGCTGAAAGTGAGATAGCAAATATACAAGGCTTAATTTCTGTGGCAAGGGGAAAAGGCAATGAATTACTTGACGACATAATTGCAAGAGTGACTGCTGGTGAGAGTAATGCTTTACAAGCACTTTTACTTGCATACAAAAGGGAAACTGAGTTGTTGACTTCTTATTCAGAACTGCTTGATAAGCTTTATGAGCGAGAAATACAATTTCTGATGAATGACAGTTCATCCCTCCCACAGTCAGAAAGAACTAAACTTACAGAGGAAGTAGAGATGCTTTCACAAACTGTCAGTTTTGGTGTGAGAAGTGGAGAGAAGCTCTTTGACATCAATGATAAGATCTTTGAAGAACTAGTAAAGAATGTTTCAGAGAACTGTCCTTTCCTTTATGACATTGTAAAGACTCTCTTCCCCACTGATAACACAAGAAAGGAGAAAGGGGCCATTCATTCTCTCAGCCTCTTAATGAGTTTAAGGAACAATCACTGTCAAAATGACATCACCCTTGTATTTACCCTAATGTTGGTAGCATATGGAGCAGGGACACGCATGGTTAATATGCTAAATAGAATTGGATTGACAATGCACTGGGATACTCTCATGTCCTTTCTGGATAAGTACAACAAAGAAAAGTTTGATGAACTGCACTCAAATATACCACATGAAAAACCTCTTATATTACTCTTGGACAATGTGAACATTTACAGAGGAAATCAAAGACATCATCGGCTATTTAAGTCATCTACCCCCAACATGTGGAATTTCACTGTTCGAGGATTGCTCAATCCGGATATCACTGGTGTTGAAGATTTGTTCAGTCAGCCTGAGACTTCACTTCAAAGCCAAGACAATGTAGTCGAGTGGAATGCTGAAAATGTGCAATTAGATAACTGTGAGGAACATTCTTTGCTTTGGAAAAGATACAGTAAACGTTACATTCTTAGTTTTCTGTATGATGGATTGAACAGGATTCCCTCACACGATAAACCTCTTAATGACATGTCAGAGAGAGAATGTAACCAGTGGTTGTCTAAAGCTGATTACAGTATCCAACAGCAGAATGTTAAAATTAGCATTCCCACCATTGAAAGCATTGCTACAAGTTCATCTACAGTCAAGACTGATGTTCACATTTTACCTCTTTTATTGGAAAATAATGCTACCCTTACAGGCACAAGTGCACTCCTTGATCAGTTCGCTAAAGAGTTTAATCTCTCCAATAAACTGGGCAATCTGGAAACACTACCATTTGACAACAGGAGCAAGAATTTCAGTCTCAAACAAGCTAGGCAGCATGTAGAGTTTTTAATAATGTTATACCAACACAGAGATGAGATGGCGGATCTAATCAAAAACCTGGAAGCAGCCGGTAAAGTGTTTGACAAAGAGTTAAGTACAAATGATGAGGGGACTGATGATGAGCTGATAGCTATGGAAAGTGATTCAGATGATGAAAATGGAACCACCATACAGCAAGCGAAGAGTCGCTTTGCAAAATGCGACAAAGCTTGTACTGAACTTTACAACAACATAGCAGATAAGTTGTGGCAATCTAAACAAAATGATTCAGTGGAACGTGTCATCCAAGACTTGCGCAGTTTAAACCTGGATGTCAGAGATCATCTTGGCCGTACTTTATTACATCTGGCTGTGGAACAAGGAAACTATGACCTTGCCTGTTGCTTACTGCAAGTAGGATGTAACCCAAATGCAAAGGAAATGTGTGGTGCAACACCTCTTGTCATAGCTGTGATAAAAAAGAACATACAAGTTTGTAAACTCCTGGTTGATCACAGAGGTAGTGTGAGGGGTCCTTTGTTCACAAATATCCCATGCCCACTTAAAATTGCTGAGCAAATGCAGTTGGCTGAAATATACGAGATACTCAATCCTCAAACCTCAGACAGTGAGGACGATGACATTTCAGCTTATGATGACTCTTTTAAGAGAGGAGCTCGTGCAAGTGGTGGATCTGCAGAACCAGTGACACCGGTGGGCCGGCAATCCCAAGGATTTGTTACAGGCTTAGTAGGAGACCAAGGCACCTGCAAAACAATCAGGGGAGTTATGGGTAGAGCTTCAGCATATGACTGGGCAGGGATAATACCCGGTGATCTGCATACCAAAGGTTATCACTGTGAAGCGTGTTTTAAAGAACAAGGACCAGGAGGATTTCACTATATTACCAATAAGGTAATGAAGCGGCCGAAGCTCATTTCTGATGTTTTCAAGAAAAAAAGTTTGAGGCTGGAAACCAAGTTAGAATTAAAGAGGCAGTGA

Transcript

OS493_024102-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR039672	Family	Lactose permease-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11328	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0008643	Biological Process	carbohydrate transport	Interproscan
GO:0015293	Molecular Function	symporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0071702	Biological Process	obsolete organic substance transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_024102-T1 global RNA-seq network